Detailed information of TA system
Overview
TA module
Type | II | Classification (family/domain) | /DUF1778(antitoxin) |
Location | 4418348..4419144 | Replicon | chromosome |
Accession | NZ_CP066369 | ||
Organism | Shewanella putrefaciens strain CGMCC-1.6515 |
Toxin (Protein)
Gene name | - | Uniprot ID | - |
Locus tag | JFT56_RS19170 | Protein ID | WP_198781553.1 |
Coordinates | 4418348..4418878 (-) | Length | 177 a.a. |
Antitoxin (Protein)
Gene name | - | Uniprot ID | - |
Locus tag | JFT56_RS19175 | Protein ID | WP_198781554.1 |
Coordinates | 4418875..4419144 (-) | Length | 90 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
JFT56_RS19155 | 4414241..4415008 | - | 768 | WP_198781550.1 | class I SAM-dependent methyltransferase | - |
JFT56_RS19160 | 4415278..4416063 | + | 786 | WP_198781551.1 | hypothetical protein | - |
JFT56_RS19165 | 4416929..4418134 | - | 1206 | WP_198781552.1 | hypothetical protein | - |
JFT56_RS19170 | 4418348..4418878 | - | 531 | WP_198781553.1 | GNAT family N-acetyltransferase | Toxin |
JFT56_RS19175 | 4418875..4419144 | - | 270 | WP_198781554.1 | DUF1778 domain-containing protein | Antitoxin |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 177 a.a. Molecular weight: 19665.90 Da Isoelectric Point: 8.6096
>T184372 WP_198781553.1 NZ_CP066369:c4418878-4418348 [Shewanella putrefaciens]
VSYSKTFKELDKSQHDRASFDCGEAELNDFIQTQAAKHMQAGISRTMVLPAATPLPNQKFPICSFYTIAPSSICRDTLPQ
AIGKKLPRYPIPVFLLAQLAVHKEFHGSGLGKASLIKALEYLWEINAHMRAYAIVVDCLTGQAESFYAKYGFEVLCEING
RVRMFIPMKTVGQLFT
VSYSKTFKELDKSQHDRASFDCGEAELNDFIQTQAAKHMQAGISRTMVLPAATPLPNQKFPICSFYTIAPSSICRDTLPQ
AIGKKLPRYPIPVFLLAQLAVHKEFHGSGLGKASLIKALEYLWEINAHMRAYAIVVDCLTGQAESFYAKYGFEVLCEING
RVRMFIPMKTVGQLFT
Download Length: 531 bp
>T184372 NZ_CP087629:c5335969-5335586 [Klebsiella pneumoniae subsp. pneumoniae]
ATGACCTCCGGATCTGCGCTTTTTGATACCAATATTCTTATTGATTTATTTAGCGGGCGTCGCGAAGCCAAACAGGCGCT
GGAGGCCTGGCCACCGCAGAATGCGATCAGTCTGATTACCTGGATGGAGGTGATGGTTGGCGCTAAAAAATATCACCAGG
AGCAGCGCACGCGAATGGCGCTGAGCACCTTTAATATCATTAACATCTCACAGGATATTGCAGAGCGAAGCGTTGCGCTG
CGGCAGGAGTATAAGCTTAAGCTGCCGGATGCCATCATTCTGGCGACGGCGCAACTCCATCGTCTGGAACTAATTACGCG
GAATACGAAGGATTTTGCCGGTATTCCTGGCGTAGTCACGCCGTACGAAATCCACCCTGAATAA
ATGACCTCCGGATCTGCGCTTTTTGATACCAATATTCTTATTGATTTATTTAGCGGGCGTCGCGAAGCCAAACAGGCGCT
GGAGGCCTGGCCACCGCAGAATGCGATCAGTCTGATTACCTGGATGGAGGTGATGGTTGGCGCTAAAAAATATCACCAGG
AGCAGCGCACGCGAATGGCGCTGAGCACCTTTAATATCATTAACATCTCACAGGATATTGCAGAGCGAAGCGTTGCGCTG
CGGCAGGAGTATAAGCTTAAGCTGCCGGATGCCATCATTCTGGCGACGGCGCAACTCCATCGTCTGGAACTAATTACGCG
GAATACGAAGGATTTTGCCGGTATTCCTGGCGTAGTCACGCCGTACGAAATCCACCCTGAATAA
Antitoxin
Download Length: 90 a.a. Molecular weight: 9814.22 Da Isoelectric Point: 4.7037
>AT184372 WP_198781554.1 NZ_CP066369:c4419144-4418875 [Shewanella putrefaciens]
MATARLDIRLDEEIKARAEKASALLGLKSLTEYVVRLMDEDATQVIAEHESVTVKADVFDQFILACDEAKAPNKALREAA
AFTKSGEFK
MATARLDIRLDEEIKARAEKASALLGLKSLTEYVVRLMDEDATQVIAEHESVTVKADVFDQFILACDEAKAPNKALREAA
AFTKSGEFK
Download Length: 270 bp
>AT184372 NZ_CP087629:c5336211-5335969 [Klebsiella pneumoniae subsp. pneumoniae]
ATGATGGCTGAAAGGGATATGGGCAGAATTCTTCTCGATTTATCAGACGATGTCATTCAACGTCTCGATGACCTCAAAGT
GCAGCGTAACATTCCGCGAGCGGAACTGTTACGTGAAGCGGTTGAACAATATCTGGAGAAACAAGATCGAGCTAAAGATA
CCATCTCCAGTGCGCTGGGTCTGTGGCAAGACTGCGAAGAAGACGGCATGGAATATCAACGTCAGCTACGCAAGGAGTGG
TAA
ATGATGGCTGAAAGGGATATGGGCAGAATTCTTCTCGATTTATCAGACGATGTCATTCAACGTCTCGATGACCTCAAAGT
GCAGCGTAACATTCCGCGAGCGGAACTGTTACGTGAAGCGGTTGAACAATATCTGGAGAAACAAGATCGAGCTAAAGATA
CCATCTCCAGTGCGCTGGGTCTGTGGCAAGACTGCGAAGAAGACGGCATGGAATATCAACGTCAGCTACGCAAGGAGTGG
TAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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