Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) /GNAT-DUF1778
Location 302291..303057 Replicon chromosome
Accession NZ_CP066369
Organism Shewanella putrefaciens strain CGMCC-1.6515

Toxin (Protein)


Gene name - Uniprot ID -
Locus tag JFT56_RS01390 Protein ID WP_198783470.1
Coordinates 302291..302788 (-) Length 166 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID -
Locus tag JFT56_RS01395 Protein ID WP_198781964.1
Coordinates 302785..303057 (-) Length 91 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JFT56_RS01370 297972..298814 + 843 WP_007651514.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
JFT56_RS01380 299983..300831 + 849 WP_198781963.1 FRG domain-containing protein -
JFT56_RS01390 302291..302788 - 498 WP_198783470.1 GNAT family N-acetyltransferase Toxin
JFT56_RS01395 302785..303057 - 273 WP_198781964.1 DUF1778 domain-containing protein Antitoxin
JFT56_RS01400 303162..304817 - 1656 WP_198781965.1 hypothetical protein -
JFT56_RS01405 304998..306218 - 1221 WP_198781966.1 threonine/serine exporter family protein -
JFT56_RS01410 306376..306774 + 399 WP_198781967.1 MAPEG family protein -
JFT56_RS01415 306769..307002 - 234 WP_198781968.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

GNAT domain

(86-149)

Antitoxin

Vibrio phage ICP1, Orf50

(7-85)


Sequences

Toxin        


Download         Length: 166 a.a.        Molecular weight: 18577.18 Da        Isoelectric Point: 9.3036

>T184368 WP_198783470.1 NZ_CP066369:c302788-302291 [Shewanella putrefaciens]
IMNTVLLDKDKHDRNRFNCGTDALNNYFKVMASQQAKKDNTRTFVLEDDNNNAHIIGFYTLTMTPIDLKALPEKLQKKHQ
SSTSGGLIARLAVDDRYKGKGFGEWLLIDALRKLLAASDSVAFPFVIVDAKDGAKHFYERYGFQAFQNAENKLFVTIADI
RASLG

Download         Length: 498 bp

>T184368 NZ_CP087629:4138703-4138921 [Klebsiella pneumoniae subsp. pneumoniae]
ATGTCTGATAAGCCATTAACTAAAACAGACTATTTGATGCGCTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGCGT
CATTGAAAAAAATAAATATGAACTGTCTGATAATGAGCTGGCGGTATTTTACTCAGCTGCCGACCATCGTCTGGCGGAAC
TGACCATGAATAAGCTATACGATAAAATCCCGACTTCTGTCTGGAAATTTATCCGCTAA

Antitoxin


Download         Length: 91 a.a.        Molecular weight: 9913.53 Da        Isoelectric Point: 9.7672

>AT184368 WP_198781964.1 NZ_CP066369:c303057-302785 [Shewanella putrefaciens]
MATTLPRITARVDVDTQDLLTKAAALAGMSSINSFVLNAAIEKAKQVIEREQTLKLNQADAVLLMEALDKPTVVNTKLKL
ASERYERKTQ

Download         Length: 273 bp

>AT184368 NZ_CP087629:4138302-4138676 [Klebsiella pneumoniae subsp. pneumoniae]
ATGGACGAATACTCGCCAAAAAGACATGATATTGCACAGCTACGCTTTCTCTGCGAAACGCTGTATCATGACTGCCTTGC
AAACCTGGAAGAGAGCAACCATGGCTGGGTCAACGACCCGACGTCGGCTGTCAATCTCCAGTTAAATGAATTGATCGAGC
ACATTGCCACATTCGCTCTTAATTATAAAATTAAGTATGCAGAGGATAATAAGCTGATCGCTCAGGTTGACGAATATCTG
GACGACACTTTTACGTTGTTCAGTAACTACGGCATTAACTCTACGGATTTGCAAAAGTGGAAAAAATCCGGTAACCGACT
ATTTCGTTGCTTTGTCAACGCCAGCCGGGAAAACCCGGCCAGTCTATCGTGTTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References