Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1825517..1825664 | Replicon | chromosome |
| Accession | NZ_CP066173 | ||
| Organism | Klebsiella quasipneumoniae strain KP2011790 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1825558..1825660 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1825517..1825664 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JDZ43_RS08750 | 1820652..1822712 | + | 2061 | WP_004203388.1 | oligopeptidase B | - |
| JDZ43_RS08755 | 1822716..1823375 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| JDZ43_RS08760 | 1823454..1823684 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JDZ43_RS08765 | 1823797..1824171 | + | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| JDZ43_RS08770 | 1824175..1825044 | + | 870 | WP_004203385.1 | copper homeostasis membrane protein CopD | - |
| JDZ43_RS08775 | 1825061..1825399 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1825517..1825664 | - | 148 | - | - | Antitoxin |
| - | 1825558..1825660 | + | 103 | - | - | Toxin |
| JDZ43_RS08780 | 1826048..1826191 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| JDZ43_RS08785 | 1826295..1827263 | - | 969 | WP_049116909.1 | VirK/YbjX family protein | - |
| JDZ43_RS08790 | 1827420..1828073 | + | 654 | WP_032456309.1 | protein-serine/threonine phosphatase | - |
| JDZ43_RS08795 | 1828070..1828261 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JDZ43_RS08800 | 1828359..1828598 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JDZ43_RS08805 | 1828715..1830148 | - | 1434 | WP_117984913.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T184131 NZ_CP066173:1825558-1825660 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT184131 NZ_CP066173:c1825664-1825517 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
