Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2663348..2663549 | Replicon | chromosome |
| Accession | NZ_CP066108 | ||
| Organism | Enterobacter hormaechei strain Eho-7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2663353..2663456 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2663348..2663549 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GVI68_RS12750 (GVI68_12725) | 2659609..2661057 | + | 1449 | WP_197347173.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GVI68_RS12755 (GVI68_12730) | 2661163..2661402 | + | 240 | WP_006811010.1 | YebV family protein | - |
| GVI68_RS12760 (GVI68_12735) | 2661437..2662081 | - | 645 | WP_032673898.1 | protein-serine/threonine phosphatase | - |
| GVI68_RS12765 (GVI68_12740) | 2662249..2663229 | + | 981 | WP_039274015.1 | VirK/YbjX family protein | - |
| GVI68_RS12770 (GVI68_12745) | 2663275..2663472 | + | 198 | WP_000460990.1 | hypothetical protein | - |
| - | 2663348..2663549 | + | 202 | - | - | Antitoxin |
| - | 2663353..2663456 | - | 104 | - | - | Toxin |
| GVI68_RS12775 (GVI68_12750) | 2663598..2663936 | - | 339 | WP_006811013.1 | YebY family protein | - |
| GVI68_RS12780 (GVI68_12755) | 2663954..2664823 | - | 870 | WP_006811014.1 | copper homeostasis membrane protein CopD | - |
| GVI68_RS12785 (GVI68_12760) | 2664825..2665196 | - | 372 | WP_032673899.1 | CopC domain-containing protein YobA | - |
| GVI68_RS12790 (GVI68_12765) | 2665334..2665564 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| GVI68_RS12795 (GVI68_12770) | 2665676..2666326 | + | 651 | WP_039274017.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| GVI68_RS12800 (GVI68_12775) | 2666351..2667013 | + | 663 | WP_006811017.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T183963 NZ_CP066108:c2663456-2663353 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT183963 NZ_CP066108:2663348-2663549 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGC
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGC
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
