Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2664422..2664623 | Replicon | chromosome |
| Accession | NZ_CP066101 | ||
| Organism | Enterobacter hormaechei strain Eho-8 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2664427..2664530 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2664422..2664623 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GVI69_RS12755 (GVI69_12730) | 2660683..2662131 | + | 1449 | WP_197347173.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GVI69_RS12760 (GVI69_12735) | 2662237..2662476 | + | 240 | WP_006811010.1 | YebV family protein | - |
| GVI69_RS12765 (GVI69_12740) | 2662511..2663155 | - | 645 | WP_032673898.1 | protein-serine/threonine phosphatase | - |
| GVI69_RS12770 (GVI69_12745) | 2663323..2664303 | + | 981 | WP_039274015.1 | VirK/YbjX family protein | - |
| GVI69_RS12775 (GVI69_12750) | 2664349..2664546 | + | 198 | WP_000460990.1 | hypothetical protein | - |
| - | 2664422..2664623 | + | 202 | - | - | Antitoxin |
| - | 2664427..2664530 | - | 104 | - | - | Toxin |
| GVI69_RS12780 (GVI69_12755) | 2664672..2665010 | - | 339 | WP_006811013.1 | YebY family protein | - |
| GVI69_RS12785 (GVI69_12760) | 2665028..2665897 | - | 870 | WP_006811014.1 | copper homeostasis membrane protein CopD | - |
| GVI69_RS12790 (GVI69_12765) | 2665899..2666270 | - | 372 | WP_032673899.1 | CopC domain-containing protein YobA | - |
| GVI69_RS12795 (GVI69_12770) | 2666408..2666638 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| GVI69_RS12800 (GVI69_12775) | 2666750..2667400 | + | 651 | WP_039274017.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| GVI69_RS12805 (GVI69_12780) | 2667425..2668087 | + | 663 | WP_006811017.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T183944 NZ_CP066101:c2664530-2664427 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT183944 NZ_CP066101:2664422-2664623 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGC
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGC
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
