Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2995384..2995593 | Replicon | chromosome |
| Accession | NZ_CP066094 | ||
| Organism | Enterobacter hormaechei strain Eho-E1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2995397..2995500 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2995384..2995593 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I9464_RS14425 (I9464_14400) | 2991652..2993100 | + | 1449 | WP_195892607.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I9464_RS14430 (I9464_14405) | 2993207..2993446 | + | 240 | WP_003859885.1 | YebV family protein | - |
| I9464_RS14435 (I9464_14410) | 2993481..2994125 | - | 645 | WP_017693252.1 | protein-serine/threonine phosphatase | - |
| I9464_RS14440 (I9464_14415) | 2994293..2995273 | + | 981 | WP_023303891.1 | VirK/YbjX family protein | - |
| I9464_RS14445 (I9464_14420) | 2995319..2995516 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2995384..2995593 | + | 210 | - | - | Antitoxin |
| - | 2995397..2995500 | - | 104 | - | - | Toxin |
| I9464_RS14450 (I9464_14425) | 2995642..2995980 | - | 339 | WP_003859787.1 | YebY family protein | - |
| I9464_RS14455 (I9464_14430) | 2995997..2996866 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| I9464_RS14460 (I9464_14435) | 2996868..2997239 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| I9464_RS14465 (I9464_14440) | 2997377..2997607 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| I9464_RS14470 (I9464_14445) | 2997719..2998369 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| I9464_RS14475 (I9464_14450) | 2998394..2999056 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T183923 NZ_CP066094:c2995500-2995397 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT183923 NZ_CP066094:2995384-2995593 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
