Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 180339..180484 | Replicon | chromosome |
| Accession | NZ_CP066089 | ||
| Organism | Citrobacter koseri strain FDAARGOS_1029 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 180374..180477 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 180339..180484 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6H86_RS00875 | 176795..177457 | - | 663 | WP_012132019.1 | exodeoxyribonuclease X | - |
| I6H86_RS00880 | 177481..178137 | - | 657 | WP_024130258.1 | carbon-nitrogen hydrolase family protein | - |
| I6H86_RS00885 | 178243..178473 | - | 231 | WP_024130259.1 | DNA polymerase III subunit theta | - |
| I6H86_RS00890 | 178614..178988 | + | 375 | WP_012132022.1 | CopC domain-containing protein YobA | - |
| I6H86_RS00895 | 178988..179863 | + | 876 | WP_080516649.1 | copper homeostasis membrane protein CopD | - |
| I6H86_RS00900 | 179880..180218 | + | 339 | WP_012132024.1 | YebY family protein | - |
| - | 180339..180484 | - | 146 | - | - | Antitoxin |
| - | 180374..180477 | + | 104 | - | - | Toxin |
| I6H86_RS00905 | 180885..181076 | - | 192 | WP_012132027.1 | YlcI/YnfO family protein | - |
| I6H86_RS00910 | 181446..183533 | - | 2088 | WP_024130260.1 | TonB-dependent receptor | - |
| I6H86_RS00915 | 183781..184443 | + | 663 | WP_024130261.1 | protein-serine/threonine phosphatase | - |
| I6H86_RS00920 | 184444..184635 | - | 192 | WP_012132031.1 | YebW family protein | - |
| I6H86_RS00925 | 184738..184974 | - | 237 | WP_024130262.1 | DUF1480 family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T183901 NZ_CP066089:180374-180477 [Citrobacter koseri]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT183901 NZ_CP066089:c180484-180339 [Citrobacter koseri]
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
