Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3128567..3128835 | Replicon | chromosome |
| Accession | NZ_CP066085 | ||
| Organism | Escherichia fergusonii strain FDAARGOS_1032 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3128694..3128797 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3128567..3128835 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6H89_RS14885 | 3125116..3125778 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| I6H89_RS14890 | 3125802..3126476 | - | 675 | WP_000824159.1 | carbon-nitrogen hydrolase family protein | - |
| I6H89_RS14895 | 3126566..3126796 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| I6H89_RS14900 | 3126935..3127309 | + | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| I6H89_RS14905 | 3127312..3128184 | + | 873 | WP_000928497.1 | copper homeostasis membrane protein CopD | - |
| I6H89_RS14910 | 3128196..3128537 | + | 342 | WP_000976176.1 | YebY family protein | - |
| - | 3128567..3128835 | - | 269 | - | - | Antitoxin |
| - | 3128694..3128797 | + | 104 | - | - | Toxin |
| I6H89_RS14915 | 3128932..3129588 | + | 657 | WP_000812748.1 | protein-serine/threonine phosphatase | - |
| I6H89_RS14920 | 3129589..3129780 | - | 192 | WP_002431587.1 | YebW family protein | - |
| I6H89_RS14925 | 3129885..3130121 | - | 237 | WP_002431586.1 | DUF1480 family protein | - |
| I6H89_RS14930 | 3130240..3131679 | - | 1440 | WP_015953343.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T183890 NZ_CP066085:3128694-3128797 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT183890 NZ_CP066085:c3128835-3128567 [Escherichia fergusonii]
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
