Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3485827..3486061 | Replicon | chromosome |
| Accession | NZ_CP066032 | ||
| Organism | Escherichia coli strain FDAARGOS_1059 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3485957..3486060 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3485827..3486061 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6I16_RS17050 | 3482382..3483044 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| I6I16_RS17055 | 3483068..3483724 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| I6I16_RS17060 | 3483826..3484056 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6I16_RS17065 | 3484195..3484569 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| I6I16_RS17070 | 3484573..3485445 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| I6I16_RS17075 | 3485458..3485799 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3485827..3486061 | - | 235 | - | - | Antitoxin |
| - | 3485957..3486060 | + | 104 | - | - | Toxin |
| I6I16_RS17080 | 3486192..3487268 | - | 1077 | WP_001189084.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| I6I16_RS17085 | 3487234..3487515 | - | 282 | WP_001311878.1 | excisionase | - |
| I6I16_RS17090 | 3487622..3487810 | - | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - | 3487626..3487804 | + | 179 | NuclAT_0 | - | - |
| - | 3487626..3487804 | + | 179 | NuclAT_0 | - | - |
| - | 3487626..3487804 | + | 179 | NuclAT_0 | - | - |
| - | 3487626..3487804 | + | 179 | NuclAT_0 | - | - |
| I6I16_RS17095 | 3487803..3487997 | - | 195 | WP_010989194.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| I6I16_RS17100 | 3488061..3489113 | - | 1053 | WP_001004417.1 | recombinase RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3463808..3543955 | 80147 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T183800 NZ_CP066032:3485957-3486060 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT183800 NZ_CP066032:c3486061-3485827 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
