Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-RHH
Location 3357223..3357743 Replicon chromosome
Accession NZ_CP065989
Organism Brevibacterium casei strain FDAARGOS_990

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag I6H47_RS14875 Protein ID WP_198499159.1
Coordinates 3357223..3357513 (-) Length 97 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag I6H47_RS14880 Protein ID WP_198499160.1
Coordinates 3357510..3357743 (-) Length 78 a.a.

Genomic Context

I6H47_RS14870I6H47_RS14885I6H47_RS14910I6H47_RS14875I6H47_RS14880I6H47_RS14890I6H47_RS14895I6H47_RS14900I6H47_RS14905I6H47_RS14915
Location: 3355386..3357182 (1797 bp)
Type: Others
Protein ID: WP_198501000.1
Location: 3357927..3358199 (273 bp)
Type: Others
Protein ID: WP_198499161.1
Location: 3360771..3361259 (489 bp)
Type: Others
Protein ID: WP_198499165.1
Location: 3357223..3357513 (291 bp)
Type: Toxin
Protein ID: WP_198499159.1
Location: 3357510..3357743 (234 bp)
Type: Antitoxin
Protein ID: WP_198499160.1
Location: 3358212..3359132 (921 bp)
Type: Others
Protein ID: WP_198499162.1
Location: 3359148..3359852 (705 bp)
Type: Others
Protein ID: WP_198499163.1
Location: 3359856..3360059 (204 bp)
Type: Others
Protein ID: WP_063249041.1
Location: 3360062..3360580 (519 bp)
Type: Others
Protein ID: WP_198499164.1
Location: 3361278..3362465 (1188 bp)
Type: Others
Protein ID: WP_198499166.1
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
I6H47_RS148703355386..3357182+1797WP_198501000.1BCCT family transporter-
I6H47_RS148753357223..3357513-291WP_198499159.1type II toxin-antitoxin system RelE/ParE family toxinToxin
I6H47_RS148803357510..3357743-234WP_198499160.1type II toxin-antitoxin system ParD family antitoxinAntitoxin
I6H47_RS148853357927..3358199+273WP_198499161.1hypothetical protein-
I6H47_RS148903358212..3359132-921WP_198499162.1bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase-
I6H47_RS148953359148..3359852-705WP_198499163.1ribonuclease III-
I6H47_RS149003359856..3360059-204WP_063249041.150S ribosomal protein L32-
I6H47_RS149053360062..3360580-519WP_198499164.1DUF177 domain-containing protein-
I6H47_RS149103360771..3361259+489WP_198499165.1hypothetical protein-
I6H47_RS149153361278..3362465-1188WP_198499166.1MFS transporter-

Associated MGEs

Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-92)

Antitoxin

Antitoxin ParD

(1-76)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 11380.77 Da        Isoelectric Point: 10.4791

>T183743 WP_198499159.1 NZ_CP065989:c3357513-3357223 [Brevibacterium casei]
VNRYRLSAAAQRDLSEIWDYTERRWDSNQAENYMQQIRSAVEHIAADPGRGRAVNEIREGYRRFATGSHVLFYRVRPKGV
DVIRVLHQRMDPTRHL

Download         Length: 291 bp

>T183743 NZ_CP087171:c1768182-1767607 [Pseudomonas atacamensis]
GTGAGGCATTCCTCTTTCACTGCTGTATACGATGCATGCGTTTTATATCCGGCCCCTTTAAGAGATTTCCTGATGTGGCT
CGCGTTGTCAGGGCTGTATCGGGCTCGCTGGACTCAGGAAATACACCACGAATGGAAGCGTAACTTATTGAAGAACAGGT
CCGACCTGACCCTCGAACAACTCGATCGCACATCGCAATTGATGGACCTGGCCATTCCAGACGCGTGTATCGATGGCTAT
GAAGACTTGGTGTCAGGCCTGACACTGCCTGATGAGAACGACCGCCATGTTCTAGCGGCCGCAATCCGATGCGGTGCCGA
TGTAATAGTGACGTTCAACCTGAAAGATTTCCCCACCCGTCACCTCGCGCCATACGGCATTGAAGCTCAGCACCCGGATG
AGTTTGTGGAAAACCTTTTCCATCTTGATTCGGCTGCCGTCGTCGCTGCGGCTCAAAGCCAGCGACGGCAATTGAAAACC
CCCAATGTGGAGGTGGACAAATATCTTGGTTTTCTCCAACGGCAAGGATTGGTCGAGTCGGTAAAGGCGTTAGGTAACTA
TCGTGCGATTCTCTGA

Antitoxin


Download         Length: 78 a.a.        Molecular weight: 8553.38 Da        Isoelectric Point: 4.0530

>AT183743 WP_198499160.1 NZ_CP065989:c3357743-3357510 [Brevibacterium casei]
MAQNTSISLDDHFVDFLSQEVASGRYQSASEVVRAGLRMLEDHETQMATLRAALIAGEESGEPEDFDFEEFIAAKRS

Download         Length: 234 bp

>AT183743 NZ_CP087171:c1768646-1768179 [Pseudomonas atacamensis]
ATGACCACCGCTACTCCATCTGCCATCAATCTGCCTGTCGAACGCGAGGTCAAAGCCGCGATTGAAGGCCAGCGCGCCCT
GAGCGCCTTCCTCACAACCGCTTTTGAAACTCAGAGAATCCAGATTTTTGATGAACAGAACGAAGCCCACAGCGTGGAGC
TGCCAACATCGGCATTACGCTTGCTGAGCGATATCCTCGCGGCGCTGGCGCAGGGCAACGCTGTGAAGGTGGTACCGATC
CACGCGGAGCTGACCACGCAGGAAGCTGCCGATCTGCTCAACGTCTCACGTCCGCACATGATCAAACTGCTGGAGAGGGG
TGAGATTTCCTACCACAAAACAGGCAAGCACCGACGTGTGCGTTTTGCCGATCTGATGGAATATAAAACCCGGCGAGACA
CCGCCAGCGAGCAGGCAATGACGCTTCTCGCGGAGCAGGCACAGGCGCTAAGGACAGGATACGAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

Loading, please wait
Source
ID
Structure
No matching records found

Antitoxin

Loading, please wait
Source
ID
Structure
No matching records found

References