Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3080224..3080495 | Replicon | chromosome |
| Accession | NZ_CP065970 | ||
| Organism | Escherichia coli strain FDAARGOS_1058 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3080354..3080457 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3080224..3080495 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6I15_RS15170 | 3076779..3077441 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| I6I15_RS15175 | 3077465..3078121 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| I6I15_RS15180 | 3078223..3078453 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6I15_RS15185 | 3078592..3078966 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| I6I15_RS15190 | 3078970..3079842 | + | 873 | WP_000879334.1 | copper homeostasis membrane protein CopD | - |
| I6I15_RS15195 | 3079855..3080196 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 3080224..3080495 | - | 272 | - | - | Antitoxin |
| - | 3080354..3080457 | + | 104 | - | - | Toxin |
| I6I15_RS15200 | 3080592..3081248 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| I6I15_RS15205 | 3081249..3081440 | - | 192 | WP_001296140.1 | YebW family protein | - |
| I6I15_RS15210 | 3081545..3081781 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| I6I15_RS15215 | 3081899..3083338 | - | 1440 | WP_000057024.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T183716 NZ_CP065970:3080354-3080457 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT183716 NZ_CP065970:c3080495-3080224 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
