Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2052165..2052310 | Replicon | chromosome |
| Accession | NZ_CP065949 | ||
| Organism | Klebsiella pneumoniae strain KP2509 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2052201..2052303 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2052165..2052310 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JDE60_RS10195 (JDE60_10195) | 2047295..2049355 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JDE60_RS10200 (JDE60_10200) | 2049359..2050018 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JDE60_RS10205 (JDE60_10205) | 2050097..2050327 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JDE60_RS10210 (JDE60_10210) | 2050440..2050814 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JDE60_RS10215 (JDE60_10215) | 2050818..2051687 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| JDE60_RS10220 (JDE60_10220) | 2051704..2052042 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2052165..2052310 | - | 146 | - | - | Antitoxin |
| - | 2052201..2052303 | + | 103 | - | - | Toxin |
| JDE60_RS10225 (JDE60_10225) | 2052678..2052821 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JDE60_RS10230 (JDE60_10230) | 2052926..2053894 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JDE60_RS10235 (JDE60_10235) | 2054051..2054704 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| JDE60_RS10240 (JDE60_10240) | 2054701..2054892 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JDE60_RS10245 (JDE60_10245) | 2054990..2055229 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JDE60_RS10250 (JDE60_10250) | 2055345..2056778 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T183669 NZ_CP065949:2052201-2052303 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT183669 NZ_CP065949:c2052310-2052165 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
