Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1873771..1873865 Replicon chromosome
Accession NZ_CP065918
Organism Yersinia pestis EV NIIEG

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1873771..1873864 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1873771..1873865 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AH66_RS08195 1869343..1870293 + 951 WP_002211090.1 prolyl aminopeptidase -
AH66_RS08200 1870353..1870583 - 231 WP_002211091.1 DNA polymerase III subunit theta -
AH66_RS08205 1870984..1871493 + 510 WP_002211092.1 non-heme ferritin -
AH66_RS08210 1871890..1872276 + 387 WP_002211093.1 CopC domain-containing protein YobA -
AH66_RS08215 1872279..1873163 + 885 WP_002211094.1 copper homeostasis membrane protein CopD -
AH66_RS08220 1873260..1873601 + 342 WP_002211095.1 YebY family protein -
- 1873771..1873864 + 94 - - Toxin
- 1873771..1873865 - 95 - - Antitoxin
AH66_RS08225 1874124..1874450 - 327 WP_002211097.1 DUF1493 family protein -
AH66_RS08230 1874444..1874902 - 459 WP_002211098.1 hypothetical protein -
AH66_RS08235 1875434..1876594 + 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
AH66_RS08240 1876594..1878672 + 2079 WP_002211100.1 flagellar biosynthesis protein FlhA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T183584 NZ_CP065918:1873771-1873864 [Yersinia pestis EV NIIEG]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT183584 NZ_CP065918:c1873865-1873771 [Yersinia pestis EV NIIEG]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References