Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1935324..1935471 | Replicon | chromosome |
| Accession | NZ_CP065846 | ||
| Organism | Klebsiella quasipneumoniae strain KqPF42 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1935365..1935467 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1935324..1935471 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I8N77_RS09400 | 1930459..1932519 | + | 2061 | WP_048324836.1 | oligopeptidase B | - |
| I8N77_RS09405 | 1932523..1933182 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| I8N77_RS09410 | 1933261..1933491 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I8N77_RS09415 | 1933604..1933978 | + | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| I8N77_RS09420 | 1933982..1934851 | + | 870 | WP_004203385.1 | copper homeostasis membrane protein CopD | - |
| I8N77_RS09425 | 1934868..1935206 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1935324..1935471 | - | 148 | - | - | Antitoxin |
| - | 1935365..1935467 | + | 103 | - | - | Toxin |
| I8N77_RS09430 | 1935855..1935998 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| I8N77_RS09435 | 1936102..1937070 | - | 969 | WP_004203383.1 | VirK/YbjX family protein | - |
| I8N77_RS09440 | 1937227..1937880 | + | 654 | WP_048324833.1 | protein-serine/threonine phosphatase | - |
| I8N77_RS09445 | 1937877..1938068 | - | 192 | WP_002911395.1 | YebW family protein | - |
| I8N77_RS09450 | 1938166..1938405 | - | 240 | WP_002911393.1 | YebV family protein | - |
| I8N77_RS09455 | 1938522..1939955 | - | 1434 | WP_048324831.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T183515 NZ_CP065846:1935365-1935467 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT183515 NZ_CP065846:c1935471-1935324 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
