Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2034521..2034668 | Replicon | chromosome |
| Accession | NZ_CP065841 | ||
| Organism | Klebsiella quasipneumoniae strain KqPF9 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2034562..2034664 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2034521..2034668 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I8N79_RS10080 | 2029656..2031716 | + | 2061 | WP_004203388.1 | oligopeptidase B | - |
| I8N79_RS10085 | 2031720..2032379 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| I8N79_RS10090 | 2032458..2032688 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I8N79_RS10095 | 2032801..2033175 | + | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| I8N79_RS10100 | 2033179..2034048 | + | 870 | WP_004203385.1 | copper homeostasis membrane protein CopD | - |
| I8N79_RS10105 | 2034065..2034403 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2034521..2034668 | - | 148 | - | - | Antitoxin |
| - | 2034562..2034664 | + | 103 | - | - | Toxin |
| I8N79_RS10110 | 2035052..2035195 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| I8N79_RS10115 | 2035299..2036267 | - | 969 | WP_124989330.1 | VirK/YbjX family protein | - |
| I8N79_RS10120 | 2036424..2037077 | + | 654 | WP_032456309.1 | protein-serine/threonine phosphatase | - |
| I8N79_RS10125 | 2037074..2037265 | - | 192 | WP_002911395.1 | YebW family protein | - |
| I8N79_RS10130 | 2037363..2037602 | - | 240 | WP_002911393.1 | YebV family protein | - |
| I8N79_RS10135 | 2037719..2039152 | - | 1434 | WP_124989329.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T183500 NZ_CP065841:2034562-2034664 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT183500 NZ_CP065841:c2034668-2034521 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
