Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1864027..1864174 | Replicon | chromosome |
| Accession | NZ_CP065838 | ||
| Organism | Klebsiella quasipneumoniae strain KqPF26 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1864068..1864170 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1864027..1864174 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I8N75_RS08940 | 1859163..1861223 | + | 2061 | WP_004203388.1 | oligopeptidase B | - |
| I8N75_RS08945 | 1861227..1861886 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| I8N75_RS08950 | 1861965..1862195 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I8N75_RS08955 | 1862308..1862682 | + | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| I8N75_RS08960 | 1862686..1863555 | + | 870 | WP_004203385.1 | copper homeostasis membrane protein CopD | - |
| I8N75_RS08965 | 1863572..1863910 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1864027..1864174 | - | 148 | - | - | Antitoxin |
| - | 1864068..1864170 | + | 103 | - | - | Toxin |
| I8N75_RS08970 | 1864558..1864701 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| I8N75_RS08975 | 1864805..1865773 | - | 969 | WP_135690175.1 | VirK/YbjX family protein | - |
| I8N75_RS08980 | 1865930..1866583 | + | 654 | WP_004203382.1 | protein-serine/threonine phosphatase | - |
| I8N75_RS08985 | 1866580..1866771 | - | 192 | WP_002911395.1 | YebW family protein | - |
| I8N75_RS08990 | 1866869..1867108 | - | 240 | WP_002911393.1 | YebV family protein | - |
| I8N75_RS08995 | 1867225..1868658 | - | 1434 | WP_094309045.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T183482 NZ_CP065838:1864068-1864170 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT183482 NZ_CP065838:c1864174-1864027 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
