Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1837393..1837538 | Replicon | chromosome |
| Accession | NZ_CP065825 | ||
| Organism | Klebsiella pneumoniae strain KpPF25 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1837429..1837531 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1837393..1837538 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I8N74_RS08965 | 1832523..1834583 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| I8N74_RS08970 | 1834587..1835246 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| I8N74_RS08975 | 1835325..1835555 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I8N74_RS08980 | 1835668..1836042 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| I8N74_RS08985 | 1836046..1836915 | + | 870 | WP_009307538.1 | copper homeostasis membrane protein CopD | - |
| I8N74_RS08990 | 1836932..1837270 | + | 339 | WP_009307539.1 | YebY family protein | - |
| - | 1837393..1837538 | - | 146 | - | - | Antitoxin |
| - | 1837429..1837531 | + | 103 | - | - | Toxin |
| I8N74_RS08995 | 1837907..1838050 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| I8N74_RS09000 | 1838155..1839123 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| I8N74_RS09005 | 1839280..1839933 | + | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| I8N74_RS09010 | 1839930..1840121 | - | 192 | WP_002911395.1 | YebW family protein | - |
| I8N74_RS09015 | 1840219..1840458 | - | 240 | WP_002911393.1 | YebV family protein | - |
| I8N74_RS09020 | 1840574..1842007 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T183420 NZ_CP065825:1837429-1837531 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT183420 NZ_CP065825:c1837538-1837393 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
