Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | yxiD-yxxD/- |
Location | 3491307..3492095 | Replicon | chromosome |
Accession | NZ_CP065790 | ||
Organism | Bacillus velezensis strain LBUM1082 |
Toxin (Protein)
Gene name | yxiD | Uniprot ID | - |
Locus tag | I8N72_RS17190 | Protein ID | WP_079891856.1 |
Coordinates | 3491754..3492095 (-) | Length | 114 a.a. |
Antitoxin (Protein)
Gene name | yxxD | Uniprot ID | - |
Locus tag | I8N72_RS17185 | Protein ID | WP_015387595.1 |
Coordinates | 3491307..3491744 (-) | Length | 146 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
I8N72_RS17150 | 3486834..3487370 | + | 537 | WP_014305969.1 | chromate resistance efflux protein ChrA | - |
I8N72_RS17155 | 3487397..3487615 | - | 219 | WP_015387600.1 | hypothetical protein | - |
I8N72_RS17160 | 3487612..3488157 | - | 546 | WP_015387599.1 | flavodoxin family protein | - |
I8N72_RS17165 | 3488280..3489161 | + | 882 | WP_015387598.1 | LysR family transcriptional regulator | - |
I8N72_RS17170 | 3489248..3489964 | - | 717 | WP_015387597.1 | endonuclease V | - |
I8N72_RS17175 | 3490004..3490504 | - | 501 | WP_015387596.1 | hypothetical protein | - |
I8N72_RS17180 | 3490696..3491136 | - | 441 | Protein_3321 | SMI1/KNR4 family protein | - |
I8N72_RS17185 | 3491307..3491744 | - | 438 | WP_015387595.1 | SMI1/KNR4 family protein | Antitoxin |
I8N72_RS17190 | 3491754..3492095 | - | 342 | WP_079891856.1 | HNH endonuclease | Toxin |
I8N72_RS17195 | 3492714..3493052 | - | 339 | Protein_3324 | transposase | - |
I8N72_RS17200 | 3493691..3494156 | - | 466 | Protein_3325 | DUF2004 domain-containing protein | - |
I8N72_RS17205 | 3494158..3494683 | - | 526 | Protein_3326 | HNH endonuclease | - |
I8N72_RS17210 | 3494854..3495159 | - | 306 | WP_003151282.1 | hypothetical protein | - |
I8N72_RS17215 | 3495176..3496921 | - | 1746 | WP_015387593.1 | ribonuclease YeeF family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 114 a.a. Molecular weight: 13224.74 Da Isoelectric Point: 9.6942
>T183397 WP_079891856.1 NZ_CP065790:c3492095-3491754 [Bacillus velezensis]
IKEALRNNNYEKLTPKETAKHRSKFTSSLKDRLIAEWEEKTNQKWPRYTEEVFDKHGEVARSIGQPYDAHHIIENNFGGP
HEWWNIHPAKYPDEHQAGIHGKGAPSGKLFPRR
IKEALRNNNYEKLTPKETAKHRSKFTSSLKDRLIAEWEEKTNQKWPRYTEEVFDKHGEVARSIGQPYDAHHIIENNFGGP
HEWWNIHPAKYPDEHQAGIHGKGAPSGKLFPRR
Download Length: 342 bp
>T183397 NZ_CP086966:104015-104281 [Pseudosulfitobacter pseudonitzschiae]
GTGAAGTTGGTTTTTTCCGATCAGGCTTGGGAAGACTATCAGTACTGGGTCAACACCAACGACAAGGTACGTGACCGGAT
CAACGAGCTGATCAAGCAGTGCAGGCGGACCCCTTTCAAAGGAACCGGCAAGCCGGAACCTTTGAAGGGCGATCTGACCG
GCTGGTGGTCACGGCGGATTTCTCAGGAAGATCGAATGGTCTACCGGGTTAGTGGAACTGGCGACGGCCAAAGCCTAGAG
ATTGCACAACTGCGGTTTCATTACTGA
GTGAAGTTGGTTTTTTCCGATCAGGCTTGGGAAGACTATCAGTACTGGGTCAACACCAACGACAAGGTACGTGACCGGAT
CAACGAGCTGATCAAGCAGTGCAGGCGGACCCCTTTCAAAGGAACCGGCAAGCCGGAACCTTTGAAGGGCGATCTGACCG
GCTGGTGGTCACGGCGGATTTCTCAGGAAGATCGAATGGTCTACCGGGTTAGTGGAACTGGCGACGGCCAAAGCCTAGAG
ATTGCACAACTGCGGTTTCATTACTGA
Antitoxin
Download Length: 146 a.a. Molecular weight: 16992.02 Da Isoelectric Point: 3.8929
>AT183397 WP_015387595.1 NZ_CP065790:c3491744-3491307 [Bacillus velezensis]
MAEFEFINHLENKTYKVPEEDILKAEQRMNVDIPNDLKQLYLEVGYGFIKGESDNAINRILGPGAVADIRLREGIFEFDP
DLGELYDDENKLIFFEVNEGVYISIDLRLANNPIFYFDTQIAESLEDFFKKFLNDNEYYIDLIED
MAEFEFINHLENKTYKVPEEDILKAEQRMNVDIPNDLKQLYLEVGYGFIKGESDNAINRILGPGAVADIRLREGIFEFDP
DLGELYDDENKLIFFEVNEGVYISIDLRLANNPIFYFDTQIAESLEDFFKKFLNDNEYYIDLIED
Download Length: 438 bp
>AT183397 NZ_CP086966:103767-104018 [Pseudosulfitobacter pseudonitzschiae]
ATGGATGTTATGACCTATTCAGACGCACGAGCTCAACTGAAGGGCGTCATGGATCGAGCGATCCACGACAAGCAAGAAGT
TGTTGTGACGCGCAAAAAAGGAGAGTCCGTCGTGGTCGTATCCTTGGAAACCTGGAACGCCGTAAATGAGACGCTGCACC
TCCTGTCCACACCAAAAAACGCATCCCGCTTGCGCGCGTCGATCGCGCAACTCGATGCTGGAACTGGCGAAGTGCGTGAG
CTGACCGAGTGA
ATGGATGTTATGACCTATTCAGACGCACGAGCTCAACTGAAGGGCGTCATGGATCGAGCGATCCACGACAAGCAAGAAGT
TGTTGTGACGCGCAAAAAAGGAGAGTCCGTCGTGGTCGTATCCTTGGAAACCTGGAACGCCGTAAATGAGACGCTGCACC
TCCTGTCCACACCAAAAAACGCATCCCGCTTGCGCGCGTCGATCGCGCAACTCGATGCTGGAACTGGCGAAGTGCGTGAG
CTGACCGAGTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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