Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | PfiT-PfiA/ParE(toxin) |
Location | 1426660..1427259 | Replicon | chromosome |
Accession | NZ_CP065720 | ||
Organism | Pseudomonas stutzeri strain FDAARGOS_877 |
Toxin (Protein)
Gene name | PfiT | Uniprot ID | - |
Locus tag | I6G34_RS06475 | Protein ID | WP_102839342.1 |
Coordinates | 1426660..1426998 (-) | Length | 113 a.a. |
Antitoxin (Protein)
Gene name | PfiA | Uniprot ID | - |
Locus tag | I6G34_RS06480 | Protein ID | WP_102839343.1 |
Coordinates | 1427011..1427259 (-) | Length | 83 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
I6G34_RS06470 | 1422832..1426296 | - | 3465 | WP_146030726.1 | type I restriction-modification system endonuclease | - |
I6G34_RS06475 | 1426660..1426998 | - | 339 | WP_102839342.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
I6G34_RS06480 | 1427011..1427259 | - | 249 | WP_102839343.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
I6G34_RS06485 | 1427870..1428454 | + | 585 | WP_102839674.1 | hypothetical protein | - |
I6G34_RS06490 | 1428702..1428899 | + | 198 | WP_102839344.1 | hypothetical protein | - |
I6G34_RS06495 | 1429054..1429332 | + | 279 | WP_102839345.1 | hypothetical protein | - |
I6G34_RS06500 | 1429365..1429661 | + | 297 | WP_102839346.1 | hypothetical protein | - |
I6G34_RS06505 | 1429673..1429909 | + | 237 | WP_102839347.1 | hypothetical protein | - |
I6G34_RS06510 | 1430399..1431217 | - | 819 | WP_102839348.1 | hypothetical protein | - |
I6G34_RS06515 | 1431300..1431515 | - | 216 | WP_146030721.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Prophage | - | - | 1409468..1471528 | 62060 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 113 a.a. Molecular weight: 12717.38 Da Isoelectric Point: 4.4536
>T183278 WP_102839342.1 NZ_CP065720:c1426998-1426660 [Pseudomonas stutzeri]
MTTFDVRFTDSASQSIEDQIHHLAVYQGTEAALAKVNSLVDVITDKLRSTPMGYPVSQQASELGIIQYRELNTDGYRVFY
EIYDSDIAVELVIRQKQSVEQALIRYCLLNPL
MTTFDVRFTDSASQSIEDQIHHLAVYQGTEAALAKVNSLVDVITDKLRSTPMGYPVSQQASELGIIQYRELNTDGYRVFY
EIYDSDIAVELVIRQKQSVEQALIRYCLLNPL
Download Length: 339 bp
>T183278 NZ_CP086848:224889-225215 [Pseudosulfitobacter pseudonitzschiae]
GTGAGGCGTGGTGAGCTGGTGACGGTCGCCCTTCAGGGCGACCACGGCAAGCCGCGTCCCGCGCTTGTGATCCAATCCGA
CCGGTTTCCGGACACCGCCACCACGACCGTCCTTCTGGTTACATCCACCTTGGTGGATGCGCCGTTGATTCGGCTGACGG
TCGAACCCTCTGCGGAGAACGGGTTGCGTATGCGATCACAGATCATGATCGACAAAGCCGTGACAGTTCGAACGGACAAG
CTGGGGAAAGCTTTCGGTCAGCTGGACGATACCGCCATGATCGAGGTGAACCGGGCACTAGCACTGTTTTTAGGAGTGGC
GGGGTAA
GTGAGGCGTGGTGAGCTGGTGACGGTCGCCCTTCAGGGCGACCACGGCAAGCCGCGTCCCGCGCTTGTGATCCAATCCGA
CCGGTTTCCGGACACCGCCACCACGACCGTCCTTCTGGTTACATCCACCTTGGTGGATGCGCCGTTGATTCGGCTGACGG
TCGAACCCTCTGCGGAGAACGGGTTGCGTATGCGATCACAGATCATGATCGACAAAGCCGTGACAGTTCGAACGGACAAG
CTGGGGAAAGCTTTCGGTCAGCTGGACGATACCGCCATGATCGAGGTGAACCGGGCACTAGCACTGTTTTTAGGAGTGGC
GGGGTAA
Antitoxin
Download Length: 83 a.a. Molecular weight: 9312.66 Da Isoelectric Point: 8.9265
>AT183278 WP_102839343.1 NZ_CP065720:c1427259-1427011 [Pseudomonas stutzeri]
MRVETISYLKRHAADLDLDEPMVVTQNGVPAYVVESYADRKRRDEAIALVKLLAIGSREYAQGKHCSADELKARLARRFA
QH
MRVETISYLKRHAADLDLDEPMVVTQNGVPAYVVESYADRKRRDEAIALVKLLAIGSREYAQGKHCSADELKARLARRFA
QH
Download Length: 249 bp
>AT183278 NZ_CP086848:224674-224892 [Pseudosulfitobacter pseudonitzschiae]
ATGCCAACCTCTGTTTCTCACCGTGTCCAGAAGCGTCGCGATGCCTTGCGTGCCGCTGGTTTGCGCCCCGTCCAGATTTG
GGTGCCGGATACCCGCCGCCCCGGTTTCGAGGCTGAGTGCCGCCGCCAGGCTGCAATTGTAGCCAAGGCCGATCGCGCAG
ATGATACTCTGAACGATTTCCTGGATGCCTCCCTGGTCGATGTGGATGACTGGGAGTGA
ATGCCAACCTCTGTTTCTCACCGTGTCCAGAAGCGTCGCGATGCCTTGCGTGCCGCTGGTTTGCGCCCCGTCCAGATTTG
GGTGCCGGATACCCGCCGCCCCGGTTTCGAGGCTGAGTGCCGCCGCCAGGCTGCAATTGTAGCCAAGGCCGATCGCGCAG
ATGATACTCTGAACGATTTCCTGGATGCCTCCCTGGTCGATGTGGATGACTGGGAGTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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