Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3004169..3004283 | Replicon | chromosome |
| Accession | NZ_CP065717 | ||
| Organism | Serratia rubidaea strain FDAARGOS_880 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3004170..3004266 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3004169..3004283 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6G37_RS14360 | 2999635..3000720 | + | 1086 | WP_197949707.1 | DUF1864 family protein | - |
| I6G37_RS14365 | 3000764..3002467 | + | 1704 | WP_197949709.1 | tryptophan 7-halogenase | - |
| I6G37_RS14370 | 3002492..3003583 | + | 1092 | WP_197949711.1 | Rieske 2Fe-2S domain-containing protein | - |
| I6G37_RS14375 | 3003759..3004070 | + | 312 | WP_197949713.1 | DUF1493 family protein | - |
| - | 3004169..3004283 | + | 115 | - | - | Antitoxin |
| - | 3004170..3004266 | - | 97 | - | - | Toxin |
| I6G37_RS14380 | 3004408..3004749 | - | 342 | WP_197949715.1 | YebY family protein | - |
| I6G37_RS14385 | 3004818..3005699 | - | 882 | WP_111736935.1 | copper homeostasis membrane protein CopD | - |
| I6G37_RS14390 | 3005703..3006086 | - | 384 | WP_111736934.1 | CopC domain-containing protein YobA | - |
| I6G37_RS14395 | 3006511..3007032 | - | 522 | WP_105231474.1 | non-heme ferritin | - |
| I6G37_RS14400 | 3007420..3007650 | + | 231 | WP_105231475.1 | DNA polymerase III subunit theta | - |
| I6G37_RS14405 | 3007690..3008649 | - | 960 | WP_111736933.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T183268 NZ_CP065717:c3004266-3004170 [Serratia rubidaea]
AACAAGCCCTGCAATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCAATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 115 bp
>AT183268 NZ_CP065717:3004169-3004283 [Serratia rubidaea]
TAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTTATTGCAGGGCTTGTTCAGCCATGCACTTTAAG
TAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTTATTGCAGGGCTTGTTCAGCCATGCACTTTAAG
