Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1789079..1789221 | Replicon | chromosome |
| Accession | NZ_CP065699 | ||
| Organism | Serratia plymuthica strain FDAARGOS_889 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1789081..1789177 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1789079..1789221 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6G46_RS08390 | 1785455..1785994 | - | 540 | WP_166728507.1 | cysteine hydrolase | - |
| I6G46_RS08395 | 1786268..1786621 | - | 354 | WP_062870514.1 | hypothetical protein | - |
| I6G46_RS08400 | 1787049..1787789 | + | 741 | WP_166728506.1 | alpha/beta hydrolase | - |
| I6G46_RS08405 | 1788686..1789000 | + | 315 | WP_166728505.1 | tyrosine-type recombinase/integrase | - |
| - | 1789079..1789221 | + | 143 | - | - | Antitoxin |
| - | 1789081..1789177 | - | 97 | - | - | Toxin |
| I6G46_RS08410 | 1789319..1789657 | - | 339 | WP_197912800.1 | YebY family protein | - |
| I6G46_RS08415 | 1789727..1790608 | - | 882 | WP_197912801.1 | copper homeostasis membrane protein CopD | - |
| I6G46_RS08420 | 1790612..1790995 | - | 384 | WP_013812465.1 | CopC domain-containing protein YobA | - |
| I6G46_RS08425 | 1791300..1791818 | - | 519 | WP_004943119.1 | non-heme ferritin | - |
| I6G46_RS08430 | 1792193..1792423 | + | 231 | WP_063197859.1 | DNA polymerase III subunit theta | - |
| I6G46_RS08435 | 1792452..1793405 | - | 954 | WP_063197862.1 | prolyl aminopeptidase | - |
| I6G46_RS08440 | 1793574..1793999 | - | 426 | WP_166728503.1 | TraR/DksA C4-type zinc finger protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T183224 NZ_CP065699:c1789177-1789081 [Serratia plymuthica]
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATA
GTATTCGGTCTTTTTTT
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATA
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 143 bp
>AT183224 NZ_CP065699:1789079-1789221 [Serratia plymuthica]
ATAAAAAAAGACCGAATACTATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
ATAAAAAAAGACCGAATACTATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
