Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4986433..4986575 | Replicon | chromosome |
| Accession | NZ_CP065688 | ||
| Organism | Serratia plymuthica strain FDAARGOS_895 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4986435..4986531 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4986433..4986575 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6G52_RS23205 | 4981860..4982399 | - | 540 | WP_063197844.1 | cysteine hydrolase | - |
| I6G52_RS23210 | 4982673..4983026 | - | 354 | WP_063197846.1 | hypothetical protein | - |
| I6G52_RS23215 | 4983449..4984187 | + | 739 | Protein_4531 | alpha/beta hydrolase | - |
| I6G52_RS23220 | 4985158..4985829 | + | 672 | WP_147424931.1 | acyltransferase | - |
| I6G52_RS23225 | 4986099..4986366 | + | 268 | Protein_4533 | tyrosine-type recombinase/integrase | - |
| - | 4986433..4986575 | + | 143 | - | - | Antitoxin |
| - | 4986435..4986531 | - | 97 | - | - | Toxin |
| I6G52_RS23230 | 4986673..4987014 | - | 342 | WP_063197854.1 | YebY family protein | - |
| I6G52_RS23235 | 4987084..4987965 | - | 882 | WP_063197857.1 | copper homeostasis membrane protein CopD | - |
| I6G52_RS23240 | 4987969..4988352 | - | 384 | WP_013812465.1 | CopC domain-containing protein YobA | - |
| I6G52_RS23245 | 4988657..4989175 | - | 519 | WP_004943119.1 | non-heme ferritin | - |
| I6G52_RS23250 | 4989550..4989780 | + | 231 | WP_063197859.1 | DNA polymerase III subunit theta | - |
| I6G52_RS23255 | 4989809..4990762 | - | 954 | WP_063197862.1 | prolyl aminopeptidase | - |
| I6G52_RS23260 | 4990931..4991356 | - | 426 | WP_063197864.1 | TraR/DksA C4-type zinc finger protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T183191 NZ_CP065688:c4986531-4986435 [Serratia plymuthica]
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 143 bp
>AT183191 NZ_CP065688:4986433-4986575 [Serratia plymuthica]
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
