Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 4348438..4348551 Replicon chromosome
Accession NZ_CP065640
Organism Serratia rubidaea strain FDAARGOS_926

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 4348438..4348534 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 4348438..4348551 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
I6G83_RS20460 4344013..4345098 + 1086 WP_054306218.1 DUF1864 family protein -
I6G83_RS20465 4345142..4346845 + 1704 WP_054306217.1 tryptophan 7-halogenase -
I6G83_RS20470 4346868..4347959 + 1092 WP_054306216.1 Rieske 2Fe-2S domain-containing protein -
- 4348438..4348534 - 97 - - Toxin
- 4348438..4348551 + 114 - - Antitoxin
I6G83_RS20475 4348676..4349017 - 342 WP_054306215.1 YebY family protein -
I6G83_RS20480 4349086..4349967 - 882 WP_054306214.1 copper homeostasis membrane protein CopD -
I6G83_RS20485 4349971..4350354 - 384 WP_015672698.1 CopC domain-containing protein YobA -
I6G83_RS20490 4350768..4351289 - 522 WP_015672699.1 non-heme ferritin -
I6G83_RS20495 4351679..4351909 + 231 WP_015672700.1 DNA polymerase III subunit theta -
I6G83_RS20500 4351956..4352915 - 960 WP_062778979.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 97 bp

>T183109 NZ_CP065640:c4348534-4348438 [Serratia rubidaea]
AACAAGCCCTGCAATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT

Antitoxin


Download         Length: 114 bp

>AT183109 NZ_CP065640:4348438-4348551 [Serratia rubidaea]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTATTGCAGGGCTTGTTCAGCCATGCACTTTAAG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References