Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2681138..2681251 Replicon chromosome
Accession NZ_CP065626
Organism Edwardsiella hoshinae strain FDAARGOS_940

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2681138..2681240 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2681138..2681251 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
I6G97_RS12605 2676398..2677024 + 627 WP_024522078.1 response regulator transcription factor -
I6G97_RS12610 2677093..2677371 + 279 WP_024522079.1 DUF134 domain-containing protein -
I6G97_RS12615 2677384..2677848 + 465 WP_024522080.1 NifB/NifX family molybdenum-iron cluster-binding protein -
I6G97_RS12620 2678030..2678755 + 726 WP_024522081.1 hypothetical protein -
I6G97_RS12625 2678842..2679291 - 450 WP_071990979.1 hypothetical protein -
I6G97_RS12630 2679333..2680847 - 1515 WP_024522083.1 cyclic diguanylate phosphodiesterase -
- 2681138..2681240 + 103 - - Toxin
- 2681138..2681251 - 114 - - Antitoxin
I6G97_RS12635 2682275..2682505 - 231 WP_115314490.1 Abi family protein -
I6G97_RS12640 2682579..2683322 + 744 WP_024522085.1 HNH endonuclease -
I6G97_RS12645 2684225..2685487 + 1263 WP_024522086.1 YadA C-terminal domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T183081 NZ_CP065626:2681138-2681240 [Edwardsiella hoshinae]
GGCAAGGCGATCCACGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCACAAGAGCCATTCCCCTAGACCTGATACA
GGAATGGTGTCAGGTCTTTTTTT

Antitoxin


Download         Length: 114 bp

>AT183081 NZ_CP065626:c2681251-2681138 [Edwardsiella hoshinae]
TTTTAATGGATAAAAAAAGACCTGACACCATTCCTGTATCAGGTCTAGGGGAATGGCTCTTGTGGAGAGCCGTGCGCTAA
AAGTTGGCATTATGCAGGCGTGGATCGCCTTGCC

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References