Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 19133..19364 | Replicon | chromosome |
| Accession | NZ_CP065624 | ||
| Organism | Escherichia coli strain FDAARGOS_941 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 19134..19237 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 19133..19364 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6G98_RS00875 | 14702..15858 | + | 1157 | WP_085948186.1 | IS3-like element IS600 family transposase | - |
| I6G98_RS00880 | 15870..16067 | + | 198 | WP_197932993.1 | hypothetical protein | - |
| I6G98_RS00885 | 16118..16306 | + | 189 | WP_000276806.1 | DUF1187 family protein | - |
| - | 16124..16302 | - | 179 | NuclAT_2 | - | - |
| - | 16124..16302 | - | 179 | NuclAT_2 | - | - |
| - | 16124..16302 | - | 179 | NuclAT_2 | - | - |
| - | 16124..16302 | - | 179 | NuclAT_2 | - | - |
| I6G98_RS00890 | 16413..16694 | + | 282 | WP_005127484.1 | excisionase | - |
| I6G98_RS00895 | 16660..17184 | + | 525 | Protein_26 | phage integrase Arm DNA-binding domain-containing protein | - |
| I6G98_RS00900 | 18122..18123 | - | 2 | WP_085948182.1 | IS3-like element IS600 family transposase | - |
| I6G98_RS00905 | 18442..19002 | + | 561 | Protein_28 | tyrosine-type recombinase/integrase | - |
| - | 19133..19364 | + | 232 | - | - | Antitoxin |
| - | 19134..19237 | - | 104 | - | - | Toxin |
| I6G98_RS00910 | 19394..19735 | - | 342 | WP_000976478.1 | YebY family protein | - |
| I6G98_RS00915 | 19748..20620 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| I6G98_RS00920 | 20624..20998 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6G98_RS00925 | 21137..21367 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6G98_RS00930 | 21469..22125 | + | 657 | WP_032359391.1 | carbon-nitrogen hydrolase family protein | - |
| I6G98_RS00935 | 22149..22811 | + | 663 | Protein_34 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T183055 NZ_CP065624:c19237-19134 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 232 bp
>AT183055 NZ_CP065624:19133-19364 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTT
