Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 475402..475633 | Replicon | chromosome |
| Accession | NZ_CP065611 | ||
| Organism | Escherichia coli strain FDAARGOS_945 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 475403..475506 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 475402..475633 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6H02_RS02985 | 470482..471573 | + | 1092 | WP_115264499.1 | AAA family ATPase | - |
| I6H02_RS02990 | 471624..471692 | + | 69 | Protein_466 | DUF1187 family protein | - |
| - | 472939..473061 | - | 123 | NuclAT_1 | - | - |
| - | 472939..473061 | - | 123 | NuclAT_1 | - | - |
| - | 472939..473061 | - | 123 | NuclAT_1 | - | - |
| - | 472939..473061 | - | 123 | NuclAT_1 | - | - |
| I6H02_RS03000 | 472940..473065 | + | 126 | Protein_468 | DUF1187 family protein | - |
| I6H02_RS03005 | 473172..473453 | + | 282 | WP_005127484.1 | excisionase | - |
| I6H02_RS03010 | 473419..474495 | + | 1077 | WP_052993702.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| I6H02_RS03015 | 474556..475253 | + | 698 | Protein_471 | IS1 family transposase | - |
| - | 475402..475633 | + | 232 | - | - | Antitoxin |
| - | 475403..475506 | - | 104 | - | - | Toxin |
| I6H02_RS03020 | 475663..476004 | - | 342 | WP_115264500.1 | YebY family protein | - |
| I6H02_RS03025 | 476017..476889 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| I6H02_RS03030 | 476893..477267 | - | 375 | WP_000168750.1 | CopC domain-containing protein YobA | - |
| I6H02_RS03035 | 477406..477636 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6H02_RS03040 | 477738..478394 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| I6H02_RS03045 | 478418..479080 | + | 663 | WP_000944263.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T182978 NZ_CP065611:c475506-475403 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 232 bp
>AT182978 NZ_CP065611:475402-475633 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTT
