Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2200960..2201128 | Replicon | chromosome |
| Accession | NZ_CP065474 | ||
| Organism | Klebsiella michiganensis strain 7525 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2201018..2201121 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2200960..2201128 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6F39_RS10530 | 2196087..2198147 | + | 2061 | WP_197664200.1 | oligopeptidase B | - |
| I6F39_RS10535 | 2198154..2198813 | - | 660 | WP_004852093.1 | exodeoxyribonuclease X | - |
| I6F39_RS10540 | 2198892..2199122 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| I6F39_RS10545 | 2199258..2199632 | + | 375 | WP_004852090.1 | CopC domain-containing protein YobA | - |
| I6F39_RS10550 | 2199637..2200506 | + | 870 | WP_004852088.1 | copper homeostasis membrane protein CopD | - |
| I6F39_RS10555 | 2200523..2200861 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2200960..2201128 | - | 169 | - | - | Antitoxin |
| - | 2201018..2201121 | + | 104 | - | - | Toxin |
| I6F39_RS10560 | 2201246..2202205 | - | 960 | WP_109212701.1 | spore coat U domain-containing protein | - |
| I6F39_RS10565 | 2202220..2204550 | - | 2331 | WP_004852083.1 | fimbria/pilus outer membrane usher protein | - |
| I6F39_RS10570 | 2204553..2205317 | - | 765 | WP_004852081.1 | molecular chaperone | - |
| I6F39_RS10575 | 2205336..2205854 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T182838 NZ_CP065474:2201018-2201121 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT182838 NZ_CP065474:c2201128-2200960 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
