Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2313232..2313377 | Replicon | chromosome |
| Accession | NZ_CP065460 | ||
| Organism | Klebsiella pneumoniae strain Gordon | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2313268..2313370 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2313232..2313377 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I5M58_RS11360 | 2308362..2310422 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| I5M58_RS11365 | 2310426..2311085 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| I5M58_RS11370 | 2311164..2311394 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I5M58_RS11375 | 2311507..2311881 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| I5M58_RS11380 | 2311885..2312754 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| I5M58_RS11385 | 2312771..2313109 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2313232..2313377 | - | 146 | - | - | Antitoxin |
| - | 2313268..2313370 | + | 103 | - | - | Toxin |
| I5M58_RS11390 | 2313745..2313888 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| I5M58_RS11395 | 2313993..2314961 | - | 969 | WP_194315551.1 | VirK/YbjX family protein | - |
| I5M58_RS11400 | 2315118..2315771 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| I5M58_RS11405 | 2315768..2315959 | - | 192 | WP_002911395.1 | YebW family protein | - |
| I5M58_RS11410 | 2316057..2316296 | - | 240 | WP_002911393.1 | YebV family protein | - |
| I5M58_RS11415 | 2316412..2317845 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T182769 NZ_CP065460:2313268-2313370 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT182769 NZ_CP065460:c2313377-2313232 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
