Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3037097..3037242 | Replicon | chromosome |
| Accession | NZ_CP065457 | ||
| Organism | Klebsiella pneumoniae strain Magic conch shell | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3037104..3037206 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3037097..3037242 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I5M59_RS14800 | 3032628..3034061 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I5M59_RS14805 | 3034177..3034416 | + | 240 | WP_002911393.1 | YebV family protein | - |
| I5M59_RS14810 | 3034514..3034705 | + | 192 | WP_002911395.1 | YebW family protein | - |
| I5M59_RS14815 | 3034702..3035355 | - | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| I5M59_RS14820 | 3035512..3036480 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| I5M59_RS14825 | 3036585..3036728 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3037097..3037242 | + | 146 | - | - | Antitoxin |
| - | 3037104..3037206 | - | 103 | - | - | Toxin |
| I5M59_RS14830 | 3037365..3037703 | - | 339 | WP_002911404.1 | YebY family protein | - |
| I5M59_RS14835 | 3037720..3038589 | - | 870 | WP_023285313.1 | copper homeostasis membrane protein CopD | - |
| I5M59_RS14840 | 3038593..3038967 | - | 375 | WP_023285314.1 | CopC domain-containing protein YobA | - |
| I5M59_RS14845 | 3039080..3039310 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I5M59_RS14850 | 3039389..3040048 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| I5M59_RS14855 | 3040052..3042112 | - | 2061 | WP_047694778.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T182750 NZ_CP065457:c3037206-3037104 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT182750 NZ_CP065457:3037097-3037242 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
