Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2233504..2233671 | Replicon | chromosome |
| Accession | NZ_CP065411 | ||
| Organism | Kosakonia radicincitans strain IAC-BECa95 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2233564..2233666 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2233504..2233671 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I5960_RS11010 | 2228705..2230765 | + | 2061 | WP_227136682.1 | oligopeptidase B | - |
| I5960_RS11015 | 2230762..2231424 | - | 663 | WP_071920971.1 | exodeoxyribonuclease X | - |
| I5960_RS11020 | 2231436..2231666 | - | 231 | WP_007371603.1 | DNA polymerase III subunit theta | - |
| I5960_RS11025 | 2231804..2232178 | + | 375 | WP_007371604.1 | CopC domain-containing protein YobA | - |
| I5960_RS11030 | 2232182..2233050 | + | 869 | Protein_2156 | copper homeostasis membrane protein CopD | - |
| I5960_RS11035 | 2233069..2233407 | + | 339 | WP_035887479.1 | YebY family protein | - |
| - | 2233504..2233671 | - | 168 | - | - | Antitoxin |
| - | 2233564..2233666 | + | 103 | - | - | Toxin |
| I5960_RS11040 | 2233744..2234829 | - | 1086 | WP_227136683.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| I5960_RS11045 | 2234798..2235070 | - | 273 | WP_227136684.1 | excisionase | - |
| I5960_RS11050 | 2235232..2235573 | - | 342 | WP_227136685.1 | hypothetical protein | - |
| I5960_RS11055 | 2235576..2235797 | - | 222 | WP_227136859.1 | TraR/DksA family transcriptional regulator | - |
| I5960_RS11060 | 2235797..2236405 | - | 609 | WP_227136686.1 | hypothetical protein | - |
| I5960_RS11065 | 2236402..2236626 | - | 225 | WP_227136687.1 | hypothetical protein | - |
| I5960_RS11070 | 2236880..2237167 | - | 288 | WP_227136688.1 | DUF4406 domain-containing protein | - |
| I5960_RS11075 | 2237180..2238055 | - | 876 | WP_227136689.1 | Dam family site-specific DNA-(adenine-N6)-methyltransferase | - |
| I5960_RS11080 | 2238052..2238513 | - | 462 | WP_227136913.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2212614..2284587 | 71973 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T182566 NZ_CP065411:2233564-2233666 [Kosakonia radicincitans]
GCCAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
GCCAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 168 bp
>AT182566 NZ_CP065411:c2233671-2233504 [Kosakonia radicincitans]
CAGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTGGCACTTTAAGAATAGATGACGGCGTCAGCTTTTCCAGTCCGCGACAAAAGTGGT
CAGAAAAA
CAGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTGGCACTTTAAGAATAGATGACGGCGTCAGCTTTTCCAGTCCGCGACAAAAGTGGT
CAGAAAAA
