Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2179488..2179655 | Replicon | chromosome |
| Accession | NZ_CP065358 | ||
| Organism | Kosakonia oryzae strain IAC-BECa90 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2179548..2179650 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2179488..2179655 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I5186_RS10515 (I5186_10470) | 2174688..2176748 | + | 2061 | WP_064565652.1 | oligopeptidase B | - |
| I5186_RS10520 (I5186_10475) | 2176745..2177407 | - | 663 | WP_227122884.1 | exodeoxyribonuclease X | - |
| I5186_RS10525 (I5186_10480) | 2177419..2177649 | - | 231 | WP_043953224.1 | DNA polymerase III subunit theta | - |
| I5186_RS10530 (I5186_10485) | 2177787..2178161 | + | 375 | WP_227122885.1 | CopC domain-containing protein YobA | - |
| I5186_RS10535 (I5186_10490) | 2178165..2179034 | + | 870 | WP_227122886.1 | copper homeostasis membrane protein CopD | - |
| I5186_RS10540 (I5186_10495) | 2179053..2179391 | + | 339 | WP_064565660.1 | YebY family protein | - |
| - | 2179488..2179655 | - | 168 | - | - | Antitoxin |
| - | 2179548..2179650 | + | 103 | - | - | Toxin |
| I5186_RS10545 (I5186_10500) | 2180155..2180685 | + | 531 | WP_227122887.1 | lipocalin family protein | - |
| I5186_RS10550 (I5186_10505) | 2180792..2181580 | - | 789 | WP_227123158.1 | MipA/OmpV family protein | - |
| I5186_RS10555 (I5186_10510) | 2181708..2182403 | + | 696 | WP_227122888.1 | response regulator | - |
| I5186_RS10560 (I5186_10515) | 2182400..2183578 | + | 1179 | WP_227122889.1 | ATP-binding protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T182476 NZ_CP065358:2179548-2179650 [Kosakonia oryzae]
GCCAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
GCCAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 168 bp
>AT182476 NZ_CP065358:c2179655-2179488 [Kosakonia oryzae]
CAGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTGGCACTTTAAGAATAGATGACGGCGTCAGCTTTTCCAGTCCGCGACAAAAGTGGA
AAGAAAAA
CAGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTGGCACTTTAAGAATAGATGACGGCGTCAGCTTTTCCAGTCCGCGACAAAAGTGGA
AAGAAAAA
