Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4107579..4107747 | Replicon | chromosome |
| Accession | NZ_CP065338 | ||
| Organism | Klebsiella michiganensis strain LDS17 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4107637..4107740 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4107579..4107747 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I4W82_RS19220 (I4W82_19215) | 4102706..4104766 | + | 2061 | WP_033836507.1 | oligopeptidase B | - |
| I4W82_RS19225 (I4W82_19220) | 4104773..4105432 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| I4W82_RS19230 (I4W82_19225) | 4105511..4105741 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| I4W82_RS19235 (I4W82_19230) | 4105877..4106251 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| I4W82_RS19240 (I4W82_19235) | 4106256..4107125 | + | 870 | WP_014229837.1 | copper homeostasis membrane protein CopD | - |
| I4W82_RS19245 (I4W82_19240) | 4107142..4107480 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 4107579..4107747 | - | 169 | - | - | Antitoxin |
| - | 4107637..4107740 | + | 104 | - | - | Toxin |
| I4W82_RS19250 (I4W82_19245) | 4107865..4108824 | - | 960 | WP_047723552.1 | spore coat protein U domain-containing protein | - |
| I4W82_RS19255 (I4W82_19250) | 4108839..4111169 | - | 2331 | WP_209419845.1 | fimbria/pilus outer membrane usher protein | - |
| I4W82_RS19260 (I4W82_19255) | 4111172..4111936 | - | 765 | WP_134897814.1 | fimbria/pilus periplasmic chaperone | - |
| I4W82_RS19265 (I4W82_19260) | 4111955..4112473 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T182360 NZ_CP065338:4107637-4107740 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT182360 NZ_CP065338:c4107747-4107579 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
