Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1929544..1929689 | Replicon | chromosome |
| Accession | NZ_CP065172 | ||
| Organism | Klebsiella pneumoniae strain KPN110 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1929580..1929682 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1929544..1929689 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I3U25_RS09420 | 1924674..1926734 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| I3U25_RS09425 | 1926738..1927397 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| I3U25_RS09430 | 1927476..1927706 | - | 231 | WP_040147502.1 | DNA polymerase III subunit theta | - |
| I3U25_RS09435 | 1927819..1928193 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| I3U25_RS09440 | 1928197..1929066 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| I3U25_RS09445 | 1929083..1929421 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1929544..1929689 | - | 146 | - | - | Antitoxin |
| - | 1929580..1929682 | + | 103 | - | - | Toxin |
| I3U25_RS09450 | 1930057..1930200 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| I3U25_RS09455 | 1930305..1931273 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| I3U25_RS09460 | 1931430..1932083 | + | 654 | WP_032415192.1 | protein-serine/threonine phosphatase | - |
| I3U25_RS09465 | 1932080..1932271 | - | 192 | WP_002911395.1 | YebW family protein | - |
| I3U25_RS09470 | 1932369..1932608 | - | 240 | WP_002911393.1 | YebV family protein | - |
| I3U25_RS09475 | 1932724..1934157 | - | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T182226 NZ_CP065172:1929580-1929682 [Klebsiella pneumoniae]
GCAAGGCGGCTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGGCTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT182226 NZ_CP065172:c1929689-1929544 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGCCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGCCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
