Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4108948..4109216 | Replicon | chromosome |
| Accession | NZ_CP065152 | ||
| Organism | Escherichia coli O150:H6 strain FEX669 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4108986..4109088 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4108948..4109216 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7994_RS19860 | 4106105..4107544 | + | 1440 | WP_012601553.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| H7994_RS19865 | 4107662..4107880 | + | 219 | WP_096939647.1 | DUF1480 family protein | - |
| H7994_RS19870 | 4108003..4108194 | + | 192 | WP_001317886.1 | YebW family protein | - |
| H7994_RS19875 | 4108195..4108851 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 4108948..4109216 | + | 269 | - | - | Antitoxin |
| - | 4108986..4109088 | - | 103 | - | - | Toxin |
| H7994_RS19880 | 4109246..4109587 | - | 342 | WP_196316002.1 | YebY family protein | - |
| H7994_RS19885 | 4109600..4110472 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| H7994_RS19890 | 4110476..4110850 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H7994_RS19895 | 4110989..4111219 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H7994_RS19900 | 4111321..4111977 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| H7994_RS19905 | 4112000..4112662 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T182156 NZ_CP065152:c4109088-4108986 [Escherichia coli O150:H6]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT182156 NZ_CP065152:4108948-4109216 [Escherichia coli O150:H6]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
