Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) phd-doc/Doc-RelB
Location 14598..15199 Replicon chromosome
Accession NZ_CP065146
Organism Proteus mirabilis strain PmBJ020

Toxin (Protein)


Gene name doc Uniprot ID A0A2X2BIG8
Locus tag I0U47_RS00065 Protein ID WP_004246497.1
Coordinates 14598..14981 (-) Length 128 a.a.

Antitoxin (Protein)


Gene name phd Uniprot ID A0A1Z1SPN9
Locus tag I0U47_RS00070 Protein ID WP_004246496.1
Coordinates 14978..15199 (-) Length 74 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
I0U47_RS00040 9971..10429 + 459 WP_004249766.1 GNAT family N-acetyltransferase -
I0U47_RS00045 10525..11262 - 738 WP_004249950.1 sel1 repeat family protein -
I0U47_RS00050 11371..12270 + 900 WP_063108742.1 N-acetylmuramic acid 6-phosphate etherase -
I0U47_RS00055 12627..13865 - 1239 WP_020946511.1 HipA domain-containing protein -
I0U47_RS00060 13878..14192 - 315 WP_004246498.1 helix-turn-helix domain-containing protein -
I0U47_RS00065 14598..14981 - 384 WP_004246497.1 type II toxin-antitoxin system death-on-curing family toxin Toxin
I0U47_RS00070 14978..15199 - 222 WP_004246496.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
I0U47_RS00075 15814..16104 + 291 WP_039433572.1 helix-turn-helix domain-containing protein -
I0U47_RS00080 16094..17449 + 1356 WP_136143626.1 type II toxin-antitoxin system HipA family toxin -
I0U47_RS00085 17462..18466 + 1005 WP_136143627.1 SEC-C domain-containing protein -
I0U47_RS00090 18477..19601 + 1125 WP_192176714.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 12627..41872 29245


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Death on curing protein

(5-115)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-52)


Sequences

Toxin        


Download         Length: 128 a.a.        Molecular weight: 14471.53 Da        Isoelectric Point: 8.5125

>T182115 WP_004246497.1 NZ_CP065146:c14981-14598 [Proteus mirabilis]
MIWVSAQEVIAFHDRILQRFPGVAGMSDPGRAEALIYRVQNRKHYEGITDVFELAATYWVAIARGHIFNDGNKRTAFFVT
MTFLYRNGIRIRDTGNMLENLTVEAATGEKTVDQLAKHLQNLVEKTN

Download         Length: 384 bp

>T182115 NZ_CP086333:c1676936-1676616 [Xanthomonas translucens pv. arrhenatheri]
ATGGCTGAAATAGTCTGGCCGGAACCGGCCCTGACCGATCTGGATGCGATTGCCGACTACATCGCCTTGGAAAGCCCGGT
AGCGGCCTCCGAGCTCGTCAAACGCCGCTTCGATCATGTCGAACAGCCTGGTGAGCACCCTGCCAGTGGCAGCCGACCGC
AAGAGCTTGGGCGGTCCCGTTATCGCCAGCGTGTCGAGCCCCCTTGCCGCGTGTTCTACCGCCATGACGGGCACACGGTC
TTTATGCTGCAGGTCATGCGCTCGGAAGGCTTGCTGCGCGAAGGCAGACTCGCATCCCGGGCCGGGCAGGCAAAGGTCTA
G

Antitoxin


Download         Length: 74 a.a.        Molecular weight: 8260.23 Da        Isoelectric Point: 5.5667

>AT182115 WP_004246496.1 NZ_CP065146:c15199-14978 [Proteus mirabilis]
MRTYTSTQARANISEVLDIATHGEPVEITRRDGCSAVVISKTEFESYQNAKLDAEFDMMMQRHGHTVEALTNR

Download         Length: 222 bp

>AT182115 NZ_CP086333:c1677181-1676924 [Xanthomonas translucens pv. arrhenatheri]
ATGCGCACCGAACTCGTCACGCCCCTCAAGCGCCAGGCCACCGAACTTCTCGCGGACATCGAGCGGGACAGGCAGCCCAT
TCTGATTACCCAGCATGGCCTGCCAAGCGCGTATCTGGTGGATGTGGAGACCCATGAACTCATGCAGCAGCGCATGGCGG
TGCTGGAGGGGATTGCCCGCGGCGAACAAGCGGTGGCGGAGGGTCGCGTGGCAACCCAGGCCGAAGCCAGGAAGCGCCTC
GGACGATGGCTGAAATAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2X2BIG8

Antitoxin

Source ID Structure
AlphaFold DB A0A1Z1SPN9

References