Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) phd-doc/Doc-RelB
Location 1657242..1657843 Replicon chromosome
Accession NZ_CP065145
Organism Proteus mirabilis strain PmBJ023

Toxin (Protein)


Gene name doc Uniprot ID A0A2X2BIG8
Locus tag I0U43_RS07325 Protein ID WP_004246497.1
Coordinates 1657242..1657625 (-) Length 128 a.a.

Antitoxin (Protein)


Gene name phd Uniprot ID A0A1Z1SPN9
Locus tag I0U43_RS07330 Protein ID WP_004246496.1
Coordinates 1657622..1657843 (-) Length 74 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
I0U43_RS07300 1652615..1653073 + 459 WP_004249766.1 GNAT family N-acetyltransferase -
I0U43_RS07305 1653169..1653906 - 738 WP_004249950.1 sel1 repeat family protein -
I0U43_RS07310 1654015..1654914 + 900 WP_063108742.1 N-acetylmuramic acid 6-phosphate etherase -
I0U43_RS07315 1655271..1656509 - 1239 WP_020946511.1 HipA domain-containing protein -
I0U43_RS07320 1656522..1656836 - 315 WP_004246498.1 helix-turn-helix domain-containing protein -
I0U43_RS07325 1657242..1657625 - 384 WP_004246497.1 type II toxin-antitoxin system death-on-curing family toxin Toxin
I0U43_RS07330 1657622..1657843 - 222 WP_004246496.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
I0U43_RS07335 1658458..1658748 + 291 WP_039433572.1 helix-turn-helix domain-containing protein -
I0U43_RS07340 1658738..1660093 + 1356 WP_136143626.1 type II toxin-antitoxin system HipA family toxin -
I0U43_RS07345 1660106..1661110 + 1005 WP_136143627.1 SEC-C domain-containing protein -
I0U43_RS07350 1661121..1662245 + 1125 WP_192176714.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 1655271..1686744 31473


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Death on curing protein

(5-115)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-52)


Sequences

Toxin        


Download         Length: 128 a.a.        Molecular weight: 14471.53 Da        Isoelectric Point: 8.5125

>T182111 WP_004246497.1 NZ_CP065145:c1657625-1657242 [Proteus mirabilis]
MIWVSAQEVIAFHDRILQRFPGVAGMSDPGRAEALIYRVQNRKHYEGITDVFELAATYWVAIARGHIFNDGNKRTAFFVT
MTFLYRNGIRIRDTGNMLENLTVEAATGEKTVDQLAKHLQNLVEKTN

Download         Length: 384 bp

>T182111 NZ_CP086332:c4642568-4642434 [Xanthomonas translucens pv. phleipratensis]
ATGAAGCGTACTTTCGCGTGGATGCTGCTGGCGATGTTTTCGGTGGGCCTGCTGTCGGGCTGCAACACGGTTGCCGGTGC
CGGCAAGGACGTGAAGAGCGCCGGCGAGAAGGTCGAAGACGCCGCCAAGAACTGA

Antitoxin


Download         Length: 74 a.a.        Molecular weight: 8260.23 Da        Isoelectric Point: 5.5667

>AT182111 WP_004246496.1 NZ_CP065145:c1657843-1657622 [Proteus mirabilis]
MRTYTSTQARANISEVLDIATHGEPVEITRRDGCSAVVISKTEFESYQNAKLDAEFDMMMQRHGHTVEALTNR

Download         Length: 222 bp

>AT182111 NZ_CP086332:c4642819-4642667 [Xanthomonas translucens pv. phleipratensis]
ATGAAGCGACTGTTCACCTTGATGATGCTGACCCTGTTCTGTGCAGGCATGCTGACTGGCTGCAACACCATGGCCGGTGC
TGGCAAGGATATGCAGAAGGCCGGCGATAAGGTGGAAAACAAGGCCGACGACTGCAAAGACGGCAAGTGCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2X2BIG8

Antitoxin

Source ID Structure
AlphaFold DB A0A1Z1SPN9

References