Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2262196..2262467 | Replicon | chromosome |
| Accession | NZ_CP065136 | ||
| Organism | Escherichia coli strain EE72d | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2262326..2262429 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2262196..2262467 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I2T83_RS10805 | 2258751..2259413 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| I2T83_RS10810 | 2259437..2260093 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| I2T83_RS10815 | 2260195..2260425 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I2T83_RS10820 | 2260564..2260938 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| I2T83_RS10825 | 2260942..2261814 | + | 873 | WP_119163958.1 | copper homeostasis membrane protein CopD | - |
| I2T83_RS10830 | 2261827..2262168 | + | 342 | WP_001520705.1 | YebY family protein | - |
| - | 2262196..2262467 | - | 272 | - | - | Antitoxin |
| - | 2262326..2262429 | + | 104 | - | - | Toxin |
| I2T83_RS10835 | 2262564..2263220 | + | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| I2T83_RS10840 | 2263221..2263412 | - | 192 | WP_001296140.1 | YebW family protein | - |
| I2T83_RS10845 | 2263517..2263753 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| I2T83_RS10850 | 2263871..2265310 | - | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T182079 NZ_CP065136:2262326-2262429 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT182079 NZ_CP065136:c2262467-2262196 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
