Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | IV | Classification (family/domain) | ykfI-yfjZ/CbtA-CbeA |
Location | 3108158..3108883 | Replicon | chromosome |
Accession | NZ_CP065036 | ||
Organism | Pectobacterium parmentieri strain PB20 |
Toxin (Protein)
Gene name | ykfI | Uniprot ID | - |
Locus tag | PB20LOC_RS14095 | Protein ID | WP_103808729.1 |
Coordinates | 3108158..3108478 (-) | Length | 107 a.a. |
Antitoxin (Protein)
Gene name | yfjZ | Uniprot ID | - |
Locus tag | PB20LOC_RS14100 | Protein ID | WP_103808730.1 |
Coordinates | 3108548..3108883 (-) | Length | 112 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
PB20LOC_RS14075 | 3104001..3105320 | + | 1320 | WP_103808725.1 | site-specific integrase | - |
PB20LOC_RS14080 | 3105392..3106441 | - | 1050 | WP_103808726.1 | macro domain-containing protein | - |
PB20LOC_RS14085 | 3106455..3107102 | - | 648 | WP_103808727.1 | DUF4433 domain-containing protein | - |
PB20LOC_RS14090 | 3107207..3108040 | - | 834 | WP_103808728.1 | DUF4942 domain-containing protein | - |
PB20LOC_RS14095 | 3108158..3108478 | - | 321 | WP_103808729.1 | TA system toxin CbtA family protein | Toxin |
PB20LOC_RS14100 | 3108548..3108883 | - | 336 | WP_103808730.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
PB20LOC_RS14105 | 3108923..3109396 | - | 474 | WP_103808731.1 | DNA repair protein RadC | - |
PB20LOC_RS14110 | 3109481..3109714 | - | 234 | WP_040034648.1 | membrane protein | - |
PB20LOC_RS14115 | 3109732..3110205 | - | 474 | WP_103808732.1 | hypothetical protein | - |
PB20LOC_RS14120 | 3110241..3110810 | - | 570 | WP_196398879.1 | hypothetical protein | - |
PB20LOC_RS14125 | 3110992..3111690 | - | 699 | WP_121301470.1 | DeoR family transcriptional regulator | - |
PB20LOC_RS14130 | 3112060..3112935 | - | 876 | WP_196398866.1 | GTPase family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 107 a.a. Molecular weight: 12066.79 Da Isoelectric Point: 4.5971
>T182013 WP_103808729.1 NZ_CP065036:c3108478-3108158 [Pectobacterium parmentieri]
MQTIPAIPSREDNPCPSPIAAWQQLLTYLLEKHYGLTLNDTPFCEENVIQEHIDAGITLVNAVNFLVEKYELVRIDRDGF
NWQEQSPFLTAVDILRARRATGLLKA
MQTIPAIPSREDNPCPSPIAAWQQLLTYLLEKHYGLTLNDTPFCEENVIQEHIDAGITLVNAVNFLVEKYELVRIDRDGF
NWQEQSPFLTAVDILRARRATGLLKA
Download Length: 321 bp
>T182013 NZ_CP086259:3888130-3888348 [Escherichia coli]
ATGTCCGAAAAACCTTTAACGAAAACCGATTATTTAATGCGTTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGTGT
TATCGAGAAAAATAAATACGAATTATCAGATAATGAACTGGCGGTATTTTACTCAGCCGCAGATCACCGCCTCGCCGAAT
TGACCATGAATAAACTATACGACAAGATCCCTTCCTCAGTATGGAAATTTATTCGCTAA
ATGTCCGAAAAACCTTTAACGAAAACCGATTATTTAATGCGTTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGTGT
TATCGAGAAAAATAAATACGAATTATCAGATAATGAACTGGCGGTATTTTACTCAGCCGCAGATCACCGCCTCGCCGAAT
TGACCATGAATAAACTATACGACAAGATCCCTTCCTCAGTATGGAAATTTATTCGCTAA
Antitoxin
Download Length: 112 a.a. Molecular weight: 12471.28 Da Isoelectric Point: 6.6869
>AT182013 WP_103808730.1 NZ_CP065036:c3108883-3108548 [Pectobacterium parmentieri]
MPSSDTPEWGLKCAVTPRFGARLVQEGHRLHYLADRASIVGTFSKTEAQSLERCFPELIKLLEQKLRMGELNPRQQNCVT
LHCNEWICEADTLGSVGYVYIVIYPSSAATQ
MPSSDTPEWGLKCAVTPRFGARLVQEGHRLHYLADRASIVGTFSKTEAQSLERCFPELIKLLEQKLRMGELNPRQQNCVT
LHCNEWICEADTLGSVGYVYIVIYPSSAATQ
Download Length: 336 bp
>AT182013 NZ_CP086259:3887730-3888104 [Escherichia coli]
ATGGATGAATACTCACCCAAAAGACATGATATCGCACAGCTTAAGTTTCTCTGTGAAACCCTGTATCATGACTGCCTTGC
AAACCTTGAAGAAAGCAATCATGGCTGGGTTAACGACCCAACCTCGGCGATCAACCTCCAGTTGAATGAACTGATTGAGC
ATATTGCGACCTTCGCACTTAATTACAAAATTAAGTATAATGAAGACAATAAGCTCATTGAGCAGATCGACGAATATCTG
GATGACACCTTTATGTTGTTCAGTAGTTATGGTATTAATATGCAGGATCTTCAGAAATGGCGGAAGTCAGGTAATCGACT
ATTCCGTTGTTTTGTCAATGCGACGAAAGAGAATCCTGCGAGTTTATCTTGTTAG
ATGGATGAATACTCACCCAAAAGACATGATATCGCACAGCTTAAGTTTCTCTGTGAAACCCTGTATCATGACTGCCTTGC
AAACCTTGAAGAAAGCAATCATGGCTGGGTTAACGACCCAACCTCGGCGATCAACCTCCAGTTGAATGAACTGATTGAGC
ATATTGCGACCTTCGCACTTAATTACAAAATTAAGTATAATGAAGACAATAAGCTCATTGAGCAGATCGACGAATATCTG
GATGACACCTTTATGTTGTTCAGTAGTTATGGTATTAATATGCAGGATCTTCAGAAATGGCGGAAGTCAGGTAATCGACT
ATTCCGTTGTTTTGTCAATGCGACGAAAGAGAATCCTGCGAGTTTATCTTGTTAG
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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