Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1820407..1820552 | Replicon | chromosome |
| Accession | NZ_CP065034 | ||
| Organism | Klebsiella pneumoniae strain 2016-1400 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1820443..1820545 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1820407..1820552 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GOY40_RS08830 | 1815537..1817597 | + | 2061 | WP_032444542.1 | oligopeptidase B | - |
| GOY40_RS08835 | 1817601..1818260 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| GOY40_RS08840 | 1818339..1818569 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| GOY40_RS08845 | 1818682..1819056 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| GOY40_RS08850 | 1819060..1819929 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| GOY40_RS08855 | 1819946..1820284 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1820407..1820552 | - | 146 | - | - | Antitoxin |
| - | 1820443..1820545 | + | 103 | - | - | Toxin |
| GOY40_RS08860 | 1820920..1821063 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| GOY40_RS08865 | 1821168..1822136 | - | 969 | WP_162472361.1 | VirK/YbjX family protein | - |
| GOY40_RS08870 | 1822293..1822946 | + | 654 | WP_031589291.1 | protein-serine/threonine phosphatase | - |
| GOY40_RS08875 | 1822943..1823134 | - | 192 | WP_002911395.1 | YebW family protein | - |
| GOY40_RS08880 | 1823232..1823471 | - | 240 | WP_002911393.1 | YebV family protein | - |
| GOY40_RS08885 | 1823587..1825020 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T181990 NZ_CP065034:1820443-1820545 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT181990 NZ_CP065034:c1820552-1820407 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
