Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1906022..1906162 | Replicon | chromosome |
| Accession | NZ_CP065032 | ||
| Organism | Serratia sp. CMO1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1906066..1906162 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1906022..1906162 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IT763_RS09045 | 1901289..1901684 | + | 396 | WP_097102344.1 | RidA family protein | - |
| IT763_RS09050 | 1901841..1902794 | + | 954 | WP_004928848.1 | prolyl aminopeptidase | - |
| IT763_RS09055 | 1902827..1903057 | - | 231 | WP_016928156.1 | DNA polymerase III subunit theta | - |
| IT763_RS09060 | 1903402..1903920 | + | 519 | WP_015377481.1 | non-heme ferritin | - |
| IT763_RS09065 | 1904213..1904629 | + | 417 | WP_046686875.1 | CopC domain-containing protein YobA | - |
| IT763_RS09070 | 1904632..1905513 | + | 882 | WP_048797011.1 | copper homeostasis membrane protein CopD | - |
| IT763_RS09075 | 1905583..1905924 | + | 342 | WP_049300694.1 | YebY family protein | - |
| - | 1906022..1906162 | - | 141 | - | - | Antitoxin |
| - | 1906066..1906162 | + | 97 | - | - | Toxin |
| IT763_RS09080 | 1906241..1907210 | - | 970 | Protein_1748 | tyrosine-type recombinase/integrase | - |
| IT763_RS09085 | 1907249..1907647 | + | 399 | WP_206195357.1 | tail fiber assembly protein | - |
| IT763_RS09090 | 1907673..1908038 | - | 366 | WP_072056115.1 | helix-turn-helix transcriptional regulator | - |
| IT763_RS09095 | 1908142..1908948 | - | 807 | WP_072056116.1 | helix-turn-helix transcriptional regulator | - |
| IT763_RS09100 | 1909144..1909608 | - | 465 | WP_193842710.1 | VOC family protein | - |
| IT763_RS09105 | 1909624..1910424 | - | 801 | WP_072056118.1 | NAD(P)H-dependent oxidoreductase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1898003..1907024 | 9021 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T181973 NZ_CP065032:1906066-1906162 [Serratia sp. CMO1]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT181973 NZ_CP065032:c1906162-1906022 [Serratia sp. CMO1]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
