Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | IV | Classification (family/domain) | sdenTA/AbiEii(toxin) |
Location | 4605409..4606850 | Replicon | chromosome |
Accession | NZ_CP065030 | ||
Organism | Pectobacterium versatile strain F131 |
Toxin (Protein)
Gene name | sdenT | Uniprot ID | A0A855MBQ9 |
Locus tag | F131LOC_RS20530 | Protein ID | WP_039296419.1 |
Coordinates | 4605409..4606296 (-) | Length | 296 a.a. |
Antitoxin (Protein)
Gene name | sdenA | Uniprot ID | A0A855MAW0 |
Locus tag | F131LOC_RS20535 | Protein ID | WP_039296424.1 |
Coordinates | 4606326..4606850 (-) | Length | 175 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
F131LOC_RS20505 | 4600569..4601516 | + | 948 | WP_103972359.1 | isoaspartyl peptidase/L-asparaginase | - |
F131LOC_RS20510 | 4601721..4602629 | + | 909 | WP_039542502.1 | LysR family transcriptional regulator | - |
F131LOC_RS20515 | 4602728..4603591 | + | 864 | WP_010300687.1 | YicC family protein | - |
F131LOC_RS20520 | 4603785..4604173 | + | 389 | Protein_4001 | DUF4102 domain-containing protein | - |
F131LOC_RS20525 | 4604363..4605187 | + | 825 | WP_039296417.1 | DNA damage-inducible protein D | - |
F131LOC_RS20530 | 4605409..4606296 | - | 888 | WP_039296419.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin |
F131LOC_RS20535 | 4606326..4606850 | - | 525 | WP_039296424.1 | hypothetical protein | Antitoxin |
F131LOC_RS20540 | 4607169..4609658 | - | 2490 | WP_051985946.1 | restriction endonuclease-like protein | - |
F131LOC_RS20545 | 4609677..4610927 | - | 1251 | WP_051985948.1 | AAA family ATPase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Genomic island | - | - | 4604363..4615236 | 10873 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 296 a.a. Molecular weight: 34019.93 Da Isoelectric Point: 5.9876
>T181951 WP_039296419.1 NZ_CP065030:c4606296-4605409 [Pectobacterium versatile]
MLKQQIRQIVQSNPDYAAVTPVIEKEILHHDIIDVLIKQGVMQRLTFIGGTSLRMCYNSSRLSEDLDFNGGHDFQPSAFE
GLESEIQTYIQNKYETEVWVNKPSGEQQGDTVSWKISIVKEANRPDLPRQKMHIDVCAIPSFDIEKRPLINHYNIVVPTE
GILVPVQSLQETLADKLIALAYRARRIKPRDIWDIVWIKQRGIDLSKTLVEKKLTARQKQTEDFRQALSIQLAKLMSEDE
VRDDFNMEMSRFIPKQIKERTLDNPEYWAYVQGEVHAIASELLNDGTPKNPFNMG
MLKQQIRQIVQSNPDYAAVTPVIEKEILHHDIIDVLIKQGVMQRLTFIGGTSLRMCYNSSRLSEDLDFNGGHDFQPSAFE
GLESEIQTYIQNKYETEVWVNKPSGEQQGDTVSWKISIVKEANRPDLPRQKMHIDVCAIPSFDIEKRPLINHYNIVVPTE
GILVPVQSLQETLADKLIALAYRARRIKPRDIWDIVWIKQRGIDLSKTLVEKKLTARQKQTEDFRQALSIQLAKLMSEDE
VRDDFNMEMSRFIPKQIKERTLDNPEYWAYVQGEVHAIASELLNDGTPKNPFNMG
Download Length: 888 bp
>T181951 NZ_CP086220:c1948559-1948305 [Escherichia coli]
GTGAAACTAATCTGGTCTGAGGAATCATGGGATGATTATCTGTACTGGCAGGAAACAGATAAGCGAATTGTTAAAAAGAT
CAATGAACTTATCAAAGATACCCGCAGAACGCCATTTGAAGGTAAGGGGAAGCCAGAACCCCTGAAACATAATTTGTCAG
GTTTCTGGTCCCGACGCATTACAGAGGAGCACCGTCTGGTATACGCGGTTACCGACGATTCACTGCTCATTGCAGCATGT
CGTTATCATTATTGA
GTGAAACTAATCTGGTCTGAGGAATCATGGGATGATTATCTGTACTGGCAGGAAACAGATAAGCGAATTGTTAAAAAGAT
CAATGAACTTATCAAAGATACCCGCAGAACGCCATTTGAAGGTAAGGGGAAGCCAGAACCCCTGAAACATAATTTGTCAG
GTTTCTGGTCCCGACGCATTACAGAGGAGCACCGTCTGGTATACGCGGTTACCGACGATTCACTGCTCATTGCAGCATGT
CGTTATCATTATTGA
Antitoxin
Download Length: 175 a.a. Molecular weight: 19289.42 Da Isoelectric Point: 9.0504
>AT181951 WP_039296424.1 NZ_CP065030:c4606850-4606326 [Pectobacterium versatile]
MAKSDELLSALAKSVNAGGGIHSVTELAFMQGGPCDPAFRKFLADCVKKGLLRRVVKGFYESVITPPEPETAIYKIIKKL
RSGVLNYISLESQLSHTGDISQVVMGRVTVVTKGRSGCFDTPYGVIELTHTKKPVEQIAPNLYYDPDIKMYRAYKEQAIA
DLKHCQRNLHMLES
MAKSDELLSALAKSVNAGGGIHSVTELAFMQGGPCDPAFRKFLADCVKKGLLRRVVKGFYESVITPPEPETAIYKIIKKL
RSGVLNYISLESQLSHTGDISQVVMGRVTVVTKGRSGCFDTPYGVIELTHTKKPVEQIAPNLYYDPDIKMYRAYKEQAIA
DLKHCQRNLHMLES
Download Length: 525 bp
>AT181951 NZ_CP086220:c1948807-1948556 [Escherichia coli]
ATGCGTACAATTAGCTACAGCGAAGCGCGTCAGAATTTGTCGGCAACAATGATGAAAGCCGTTGAAGATCATGCCCCGAT
CCTTATTACTCGTCAGAATGGAGAGGCTTGTGTTCTGATGTCACTCGAAGAATACAACTCGCTGGAAGAGACGGCTTATC
TACTGCGCTCCCCCGCTAACGCCCGGAGATTGATGGACTCAATCGATAGCCTGAAATCAGGCAAAGGAACAGAAAAGGAC
ATTATTGAGTGA
ATGCGTACAATTAGCTACAGCGAAGCGCGTCAGAATTTGTCGGCAACAATGATGAAAGCCGTTGAAGATCATGCCCCGAT
CCTTATTACTCGTCAGAATGGAGAGGCTTGTGTTCTGATGTCACTCGAAGAATACAACTCGCTGGAAGAGACGGCTTATC
TACTGCGCTCCCCCGCTAACGCCCGGAGATTGATGGACTCAATCGATAGCCTGAAATCAGGCAAAGGAACAGAAAAGGAC
ATTATTGAGTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A855MBQ9 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A855MAW0 |