181856

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) omega-epsilon-zeta/-
Location 634835..636414 Replicon chromosome
Accession NZ_CP064871
Organism Xanthomonas oryzae pv. oryzicola strain YN01

Toxin (Protein)


Gene name avrRxo1 Uniprot ID A0A5E8KQ48
Locus tag IYN96_RS02930 Protein ID WP_047340211.1
Coordinates 634835..636100 (+) Length 422 a.a.

Antitoxin (Protein)


Gene name arc1 Uniprot ID A0A0C5UZA4
Locus tag IYN96_RS02935 Protein ID WP_044749828.1
Coordinates 636118..636414 (+) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IYN96_RS02910 (IYN96_02900) 632107..632325 + 219 WP_076342548.1 Imm31 family immunity protein -
IYN96_RS02915 (IYN96_02905) 632371..632487 - 117 Protein_555 IS30 family transposase -
IYN96_RS02920 (IYN96_02910) 632905..633930 + 1026 Protein_556 hemagglutinin repeat-containing protein -
IYN96_RS02925 (IYN96_02915) 633930..634460 + 531 Protein_557 IS30 family transposase -
IYN96_RS02930 (IYN96_02920) 634835..636100 + 1266 WP_047340211.1 zeta toxin family type III secretion system effector XopAJ/AvrRxo1 Toxin
IYN96_RS02935 (IYN96_02925) 636118..636414 + 297 WP_044749828.1 hypothetical protein Antitoxin
IYN96_RS02940 (IYN96_02930) 636636..636902 + 267 Protein_560 transposase -
IYN96_RS02945 (IYN96_02935) 636969..637394 - 426 Protein_561 integrase core domain-containing protein -
IYN96_RS02950 (IYN96_02940) 637463..638565 + 1103 WP_154235785.1 IS3 family transposase -
IYN96_RS02955 (IYN96_02945) 638595..638672 + 78 Protein_563 anti-sigma factor antagonist -
IYN96_RS02960 (IYN96_02950) 638767..638942 + 176 Protein_564 HAD family hydrolase -
IYN96_RS02965 (IYN96_02955) 639158..639910 - 753 WP_024712407.1 YceI family protein -
IYN96_RS02970 (IYN96_02960) 640121..640711 - 591 WP_014504809.1 malonic semialdehyde reductase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 632107..646345 14238
- inside IScluster/Tn - - 634047..638565 4518


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Zeta toxin domain

(149-291)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 422 a.a.        Molecular weight: 45159.73 Da        Isoelectric Point: 6.9140

>T181856 WP_047340211.1 NZ_CP064871:634835-636100 [Xanthomonas oryzae pv. oryzicola]
MKNKTDIAGIAGLSTSHVSFDDAESKSVLDGSTQSTPEYKFQTPLDQLPARPAGPKSSNTTDAYIHESLPHSVPIAGAST
SAATHQQATQRKGTDEIYGLGSLPSAGPERWDYLANPGNWHPERRKLHEKLLDQARSSALTLAESLESDGCQPTLFALRG
NTATGKTRIATKKIPVLAAALKKTGGKGCVNPDVFKSSLAKSEAGAKIFSSAQVHSESSFLADRFEGGLRSQKTGSGAIA
SIVVDKRLSRAYEIDSYIQLAKETGRKVELCDIDAPLENSLVGVLQRKPEGEDPRPPYPVVSSGFVAVRSNRMYVIDRFI
ADPSLGNYRLFGTAEDGEKVMVASVIGGEFSVENAELYEKITSPQLSVTGDLADKVIDKELIDRLKNNIADPERAAKTQA
ALEKYSGKSWSAALAAHSELI

Download         Length: 1266 bp

>T181856 NZ_CP086191:c124496-123573 [Xanthomonas oryzae]
ATGAACGAACCTGACAAGAGCAGGCGCACTGTTGCCGCGTCGGTTCGCGCCCGGCTGCTCAACAAGGCCCGCGCCGAAAG
ACTCGACTTCAACCTGCTGCTGACCCGCTACGCGCTGGAGCGCGTCCTTTACCGCCTGAGCGTTTCGGAGCAGCAGGGTC
AATTCTTGCTCAAAGGTGCGCTGCTGTTCGACATCTGGTTCGACATACCGCATCGCCCGACGCACGATGCCGACCTGCTG
GGCTTCGGCTCCACCGAGATCCCACATCTGGAAGACCTGTTCCGCAGAATCAGTCAAATCGCCAGCGATGACGGCATCGT
GTTTCAGGCCGACAGCGTGAAGGCCGCCGAAATCCGCAAGGAGGCCAACTACGCGGGCGTCCGTGTGACGATGATCGGCC
TGCTCGATGGCGCGCGCTGCACGGTGCAGATCGACATCGGTTTCGGCGACGCCGTGACGCCCGGCCCGGACAACGTGCAG
TACCCAGTCATCCTCGACGGCATGCCGCAGCCGCAACTGCGGGTCTATCCCCGCTACACCGTGGTCGCCGAAAAGCTGGA
AGCGATGGTCAAGCTCGGCATCCTCAACAGCCGGATGAAGGACTACTTCGACCTCTGGGTTCTCGCCGGACATTCCGACT
TCGACGGTGCGGTGCTGGCCACGGCCATTCGCGCCACGTTCGAGTGCAGGGGTACGGCCATCCCACCCGGCGCGCCGCTG
GGCCTCACCGATGAGTTCGGCCTGGACGAGCAGAAGACAAAGCAGTGGCAGGCGTTCCTGCGCAAGAACACCTTGGAGCC
GATGCCGCTGACCACGGTGATCGAAGCGCTGCGCGAATTCGTGCTGCCCGTGCTGGCCGCGCTCGCGGCAGGCGAAGGTT
TCGACCGCCAGTGGCGCGCGGGCGCGGGATGGGATGCGGCCTGA

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11327.83 Da        Isoelectric Point: 5.2138

>AT181856 WP_044749828.1 NZ_CP064871:636118-636414 [Xanthomonas oryzae pv. oryzicola]
MKTLTGADALEFHKKLKERNKALHASDLELALVHADAVGKERFDLEELEKICDTSDAGRLTDAKERHDIYERMYYVEYPN
VMTLKEFAHIVETLSSWS

Download         Length: 297 bp

>AT181856 NZ_CP086191:c125092-124493 [Xanthomonas oryzae]
ATGGACACGACCGTCGACAAGCTGCTGGAGCTGGTGCGCACGCGGGGACTTCTGCGCCCGCACGATCTGGCCCCACTGGG
CATCCCACGGGTGGCCCTGACGCGGGCCGTTCGGCGCGGGCAACTGGAGCGCGTCGGGCGCGGCCTGTACGGCCTGGTGG
CGCGTCCGGTGTCGGCCCACGGCACGCTGGCCGAAGTCGCGCGCCGCGTGCCCAAGGGCGTGGTCTGCCTGCTGTCGGCG
CTGCGCGTCCACGACCTGACGACCCAGGCCCCGTTCGAGGTGTGGCTGGCCATCGACAACAAGGCCGCTGCCCCGAAGCT
GGACTACCCGCCGCTACGTCTCGTGCGCTTCTCCGGGCCGGCGCTGAGCGAGGGCGTCGAGGAACACGTTGTTGATGGTG
TGCCCGTCCACGTGACCAGCGTCGCCAAGACCGTGGCCGACTGCTTCAAGTACCGCAACAAGATCGGCATCGACGTGGCG
CTGGAAGCGCTGCGCGAGGCGTGGGTTGCCCGGCGCATGACCAGCGACGAGATCTGGCACTACGCCAAGATCGACCGCGT
CGCCAACGTGATGCGTCCCTATCTGGAGAGCCTGGCATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A5E8KQ48

Antitoxin

Source ID Structure
AlphaFold DB A0A0C5UZA4

References