Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | EcnAB/- |
Location | 389911..390272 | Replicon | chromosome |
Accession | NZ_CP064871 | ||
Organism | Xanthomonas oryzae pv. oryzicola strain YN01 |
Toxin (Protein)
Gene name | EcnB | Uniprot ID | G7TLC7 |
Locus tag | IYN96_RS01745 | Protein ID | WP_011257368.1 |
Coordinates | 390138..390272 (+) | Length | 45 a.a. |
Antitoxin (Protein)
Gene name | EcnA | Uniprot ID | G7TLC8 |
Locus tag | IYN96_RS01740 | Protein ID | WP_011407410.1 |
Coordinates | 389911..390063 (+) | Length | 51 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
IYN96_RS01715 (IYN96_01705) | 386253..386936 | - | 684 | WP_014505034.1 | dTMP kinase | - |
IYN96_RS01720 | 387416..387953 | - | 538 | Protein_328 | GTPase | - |
IYN96_RS01725 (IYN96_01720) | 387950..388348 | - | 399 | Protein_329 | hypothetical protein | - |
IYN96_RS01730 | 388340..388558 | - | 219 | Protein_330 | hypothetical protein | - |
IYN96_RS01735 (IYN96_01725) | 388880..389803 | + | 924 | WP_014505030.1 | arginase | - |
IYN96_RS01740 (IYN96_01730) | 389911..390063 | + | 153 | WP_011407410.1 | entericidin A/B family lipoprotein | Antitoxin |
IYN96_RS01745 (IYN96_01735) | 390138..390272 | + | 135 | WP_011257368.1 | entericidin A/B family lipoprotein | Toxin |
IYN96_RS01750 (IYN96_01740) | 390515..390725 | + | 211 | Protein_334 | CsbD family protein | - |
IYN96_RS01755 (IYN96_01745) | 390894..392183 | + | 1290 | WP_024711517.1 | tryptophan--tRNA ligase | - |
IYN96_RS01760 (IYN96_01750) | 392314..393258 | + | 945 | WP_044749698.1 | MBL fold metallo-hydrolase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 45 a.a. Molecular weight: 4457.33 Da Isoelectric Point: 10.2040
>T181855 WP_011257368.1 NZ_CP064871:390138-390272 [Xanthomonas oryzae pv. oryzicola]
MKRAIVLLVLSMLSVGLLSGCNTVAGAGKDVKGAGEKVEDAARK
MKRAIVLLVLSMLSVGLLSGCNTVAGAGKDVKGAGEKVEDAARK
Download Length: 135 bp
>T181855 NZ_CP086189:c7523-7197 [Xanthomonas oryzae]
ATGATGCGGGGTGACTTTGTGACCATCGCCATGCAAGGCGACTTCGGAAAACCACGGCCCGCTCTAGTGATCCAGGCCGA
CCAGTTTGACGCACACACCACCGTGACGGTGCTGCCGGTGACAAGCACGCTCGTTGCTGCGCCGCTGCTGCGCATTACCG
TTCATCCAAGTACCGACAATGGTTTGCAGAAGCCGTCTCAGGTGATGGTGGACAAGGCCATGACCGTGAAGCGTGACAAG
GTAGGTCGAGCCTTTGGGCGCATAGACGCTGATGCGTTGGTGGTAATTGAGCGCTGCCTGGCCGTGTTCTTGGGCATCGC
TAAGTGA
ATGATGCGGGGTGACTTTGTGACCATCGCCATGCAAGGCGACTTCGGAAAACCACGGCCCGCTCTAGTGATCCAGGCCGA
CCAGTTTGACGCACACACCACCGTGACGGTGCTGCCGGTGACAAGCACGCTCGTTGCTGCGCCGCTGCTGCGCATTACCG
TTCATCCAAGTACCGACAATGGTTTGCAGAAGCCGTCTCAGGTGATGGTGGACAAGGCCATGACCGTGAAGCGTGACAAG
GTAGGTCGAGCCTTTGGGCGCATAGACGCTGATGCGTTGGTGGTAATTGAGCGCTGCCTGGCCGTGTTCTTGGGCATCGC
TAAGTGA
Antitoxin
Download Length: 51 a.a. Molecular weight: 5046.99 Da Isoelectric Point: 8.7942
>AT181855 WP_011407410.1 NZ_CP064871:389911-390063 [Xanthomonas oryzae pv. oryzicola]
MKRLLTLMVLGLFSAGVMTGCNTVAGAGKDLQGAGGKVEKTAEKCSDGKC
MKRLLTLMVLGLFSAGVMTGCNTVAGAGKDLQGAGGKVEKTAEKCSDGKC
Download Length: 153 bp
>AT181855 NZ_CP086189:c7690-7520 [Xanthomonas oryzae]
ATGGCAGGTCTGCGTCCGGTGCAAATTTGGGTGCCAGACACACGGCGGCCTGACTTCGCCGAGGAATGCCGCCGTCAGTG
TCGTCTTGCTGCACAAGCGGACATGGCGGACACCGACATGCAGCGCTTCATGGATGAGGCGCTAGCAGACATGGATGGCT
GGACGGAATGA
ATGGCAGGTCTGCGTCCGGTGCAAATTTGGGTGCCAGACACACGGCGGCCTGACTTCGCCGAGGAATGCCGCCGTCAGTG
TCGTCTTGCTGCACAAGCGGACATGGCGGACACCGACATGCAGCGCTTCATGGATGAGGCGCTAGCAGACATGGATGGCT
GGACGGAATGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0C5UG40 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0C5V759 |