181848

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-YefM
Location 1460196..1460752 Replicon chromosome
Accession NZ_CP064858
Organism Vibrio europaeus strain 07/118 T2

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag IXK98_RS15325 Protein ID WP_171801475.1
Coordinates 1460196..1460501 (-) Length 102 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag IXK98_RS15330 Protein ID WP_171801476.1
Coordinates 1460510..1460752 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IXK98_RS15295 1455419..1455784 - 366 WP_069666187.1 CidA/LrgA family protein -
IXK98_RS15300 1455930..1457354 - 1425 WP_195877534.1 exodeoxyribonuclease I -
IXK98_RS15305 1457851..1458096 + 246 WP_171801471.1 hypothetical protein -
IXK98_RS15310 1458183..1458857 + 675 WP_171801472.1 hypothetical protein -
IXK98_RS15315 1459101..1459652 + 552 WP_171801473.1 VRR-NUC domain-containing protein -
IXK98_RS15320 1459774..1460142 + 369 WP_171801474.1 hypothetical protein -
IXK98_RS15325 1460196..1460501 - 306 WP_171801475.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
IXK98_RS15330 1460510..1460752 - 243 WP_171801476.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
IXK98_RS15335 1460889..1462262 - 1374 WP_171801477.1 L-cystine transporter -
IXK98_RS15340 1462452..1463168 - 717 WP_171801478.1 oxidoreductase -
IXK98_RS15345 1463658..1464269 + 612 WP_069666192.1 flavin reductase family protein -
IXK98_RS15350 1464279..1465310 + 1032 WP_171801479.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(7-91)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-70)


Sequences

Toxin        


Download         Length: 102 a.a.        Molecular weight: 12023.89 Da        Isoelectric Point: 9.8439

>T181848 WP_171801475.1 NZ_CP064858:c1460501-1460196 [Vibrio europaeus]
MPQRHFKLSKLAQRHLIKVKEYTLDNYSELQWQRYKDTLLSGFQLLAENPDLGRDCSEIYPQGFYFHIGKHTAYFTKENG
FILIVAVLNQSLLPEKHLKRR

Download         Length: 306 bp

>T181848 NZ_CP086185:2568039-2568191 [Xanthomonas oryzae]
ATGAAGCGACTGCTGACACTGATGGTGCTGGGCCTGTTTTCGGCCGGCGTGATGACGGGCTGCAACACCGTGGCTGGCGC
TGGCAAGGACTTGCAGGGCGCGGGTGGGAAGGTCGAGAAAACGGCCGAAAAATGCAGCGATGGTAAGTGCTGA

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 9026.28 Da        Isoelectric Point: 4.8604

>AT181848 WP_171801476.1 NZ_CP064858:c1460752-1460510 [Vibrio europaeus]
MNTLTANDAKRNFGELLLSAQREPVKISKNSKDAVIVMSIKDYEELESMKAEYLKHCFESAKKDLAEGNTIDGESFLKEL

Download         Length: 243 bp

>AT181848 NZ_CP086185:2568255-2568389 [Xanthomonas oryzae]
ATGAAGCGTGCAATTGTGCTGCTCGTGCTGTCCATGTTGTCGGTCGGTCTGCTGTCGGGCTGCAACACCGTCGCAGGTGC
CGGCAAGGACGTGAAGGGCGCCGGCGAGAAGGTGGAAGACGCAGCGCGTAAGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References