Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2026084..2026355 | Replicon | chromosome |
| Accession | NZ_CP064847 | ||
| Organism | Escherichia coli strain 20 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2026214..2026317 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2026084..2026355 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IPT86_RS09815 | 2022639..2023301 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IPT86_RS09820 | 2023325..2023981 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| IPT86_RS09825 | 2024083..2024313 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IPT86_RS09830 | 2024452..2024826 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| IPT86_RS09835 | 2024830..2025702 | + | 873 | WP_075861812.1 | copper homeostasis membrane protein CopD | - |
| IPT86_RS09840 | 2025715..2026056 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2026084..2026355 | - | 272 | - | - | Antitoxin |
| - | 2026214..2026317 | + | 104 | - | - | Toxin |
| IPT86_RS09845 | 2026452..2027108 | + | 657 | WP_000814509.1 | protein-serine/threonine phosphatase | - |
| IPT86_RS09850 | 2027109..2027300 | - | 192 | WP_001296140.1 | YebW family protein | - |
| IPT86_RS09855 | 2027405..2027641 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IPT86_RS09860 | 2027759..2029198 | - | 1440 | WP_077902351.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T181822 NZ_CP064847:2026214-2026317 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT181822 NZ_CP064847:c2026355-2026084 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
