Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3668657..3668825 | Replicon | chromosome |
| Accession | NZ_CP064784 | ||
| Organism | Klebsiella sp. BDA134-6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3668664..3668767 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3668657..3668825 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IYV58_RS16910 | 3663931..3664449 | + | 519 | WP_004122022.1 | spore coat U domain-containing protein | - |
| IYV58_RS16915 | 3664468..3665232 | + | 765 | WP_049114587.1 | molecular chaperone | - |
| IYV58_RS16920 | 3665235..3667565 | + | 2331 | WP_049114586.1 | fimbrial biogenesis outer membrane usher protein | - |
| IYV58_RS16925 | 3667580..3668539 | + | 960 | WP_195729151.1 | spore coat U domain-containing protein | - |
| - | 3668657..3668825 | + | 169 | - | - | Antitoxin |
| - | 3668664..3668767 | - | 104 | - | - | Toxin |
| IYV58_RS16930 | 3668924..3669262 | - | 339 | WP_004122026.1 | YebY family protein | - |
| IYV58_RS16935 | 3669279..3670148 | - | 870 | WP_004122027.1 | copper homeostasis membrane protein CopD | - |
| IYV58_RS16940 | 3670153..3670527 | - | 375 | WP_004122028.1 | CopC domain-containing protein YobA | - |
| IYV58_RS16945 | 3670663..3670893 | + | 231 | WP_004122029.1 | DNA polymerase III subunit theta | - |
| IYV58_RS16950 | 3670972..3671631 | + | 660 | WP_004122030.1 | exodeoxyribonuclease X | - |
| IYV58_RS16955 | 3671638..3673698 | - | 2061 | WP_032741886.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T181723 NZ_CP064784:c3668767-3668664 [Klebsiella sp. BDA134-6]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT181723 NZ_CP064784:3668657-3668825 [Klebsiella sp. BDA134-6]
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
