Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | Hha-TomB/- |
Location | 1403996..1404615 | Replicon | chromosome |
Accession | NZ_CP064784 | ||
Organism | Klebsiella sp. BDA134-6 |
Toxin (Protein)
Gene name | Hha | Uniprot ID | H3N9D8 |
Locus tag | IYV58_RS06470 | Protein ID | WP_004099646.1 |
Coordinates | 1403996..1404214 (-) | Length | 73 a.a. |
Antitoxin (Protein)
Gene name | TomB | Uniprot ID | H3N7X7 |
Locus tag | IYV58_RS06475 | Protein ID | WP_004129911.1 |
Coordinates | 1404241..1404615 (-) | Length | 125 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
IYV58_RS06440 | 1400043..1400306 | + | 264 | WP_004129897.1 | type B 50S ribosomal protein L31 | - |
IYV58_RS06445 | 1400306..1400446 | + | 141 | WP_003859006.1 | type B 50S ribosomal protein L36 | - |
IYV58_RS06450 | 1400443..1401141 | - | 699 | WP_049114564.1 | GNAT family N-acetyltransferase | - |
IYV58_RS06455 | 1401242..1402696 | + | 1455 | WP_087828755.1 | PLP-dependent aminotransferase family protein | - |
IYV58_RS06460 | 1402671..1403141 | - | 471 | WP_004129906.1 | YlaC family protein | - |
IYV58_RS06465 | 1403268..1403834 | - | 567 | WP_087828754.1 | maltose O-acetyltransferase | - |
IYV58_RS06470 | 1403996..1404214 | - | 219 | WP_004099646.1 | hemolysin expression modulator Hha | Toxin |
IYV58_RS06475 | 1404241..1404615 | - | 375 | WP_004129911.1 | Hha toxicity modulator TomB | Antitoxin |
IYV58_RS06480 | 1405083..1408229 | - | 3147 | WP_004129913.1 | multidrug efflux RND transporter permease subunit | - |
IYV58_RS06485 | 1408252..1409445 | - | 1194 | WP_004129915.1 | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 73 a.a. Molecular weight: 8640.05 Da Isoelectric Point: 8.9008
>T181722 WP_004099646.1 NZ_CP064784:c1404214-1403996 [Klebsiella sp. BDA134-6]
MSDKTLTKIDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPPSVWKFIR
MSDKTLTKIDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPPSVWKFIR
Download Length: 219 bp
>T181722 NZ_CP086111:c2474507-2474067 [Skermanella rosea]
ATGATCCTGCTGGATACTAACGTCGTCTCGGAAGCGATGACGCGAGAACCGCATCCTCGGGTGCGCGAATGGCTCGATGC
ACAGTCGGCCGAGACGCTGTTTCTTTCAAGCATCACCGTCGCCGAACTTCTGTTCGGCATTGGTGCATTGCCAGCCGGAA
GGCGCAAGAACGCCTTGGCCGCTGCGCTCGACGACGTGTTGGACGTTTTTGCCGCCCGCATCCTGCCATTCGATACCCCG
GCAGCGCGGCGCTATGCCGATCTCGCCGTCAAGGCACGCGCGGCTGGGAAGGGCTTCCCAACGCCCGACGGGTACATCGC
CTCGATCGCCGCTGCGCATGGTTTCGCCGTGGCATCGCGCGACACGAGCGCGTTCAATGCCGCAGGCCTGACGGTGATCG
ATCCTTGGACATGGATTGACCCTGACGCAGACCGTGAATGA
ATGATCCTGCTGGATACTAACGTCGTCTCGGAAGCGATGACGCGAGAACCGCATCCTCGGGTGCGCGAATGGCTCGATGC
ACAGTCGGCCGAGACGCTGTTTCTTTCAAGCATCACCGTCGCCGAACTTCTGTTCGGCATTGGTGCATTGCCAGCCGGAA
GGCGCAAGAACGCCTTGGCCGCTGCGCTCGACGACGTGTTGGACGTTTTTGCCGCCCGCATCCTGCCATTCGATACCCCG
GCAGCGCGGCGCTATGCCGATCTCGCCGTCAAGGCACGCGCGGCTGGGAAGGGCTTCCCAACGCCCGACGGGTACATCGC
CTCGATCGCCGCTGCGCATGGTTTCGCCGTGGCATCGCGCGACACGAGCGCGTTCAATGCCGCAGGCCTGACGGTGATCG
ATCCTTGGACATGGATTGACCCTGACGCAGACCGTGAATGA
Antitoxin
Download Length: 125 a.a. Molecular weight: 14350.09 Da Isoelectric Point: 4.8989
>AT181722 WP_004129911.1 NZ_CP064784:c1404615-1404241 [Klebsiella sp. BDA134-6]
MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAVNLQLNELIEHIAAFALNYKIKYAEDNKLITQIDEYL
DDTFVLFSNYGINSADLQKWRKSGNRLFRCFVNASRENPASLSC
MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAVNLQLNELIEHIAAFALNYKIKYAEDNKLITQIDEYL
DDTFVLFSNYGINSADLQKWRKSGNRLFRCFVNASRENPASLSC
Download Length: 375 bp
>AT181722 NZ_CP086111:c2474774-2474520 [Skermanella rosea]
ATGGCCGCTGTCACCATTCGCAACCTCTCCGAGGAGGCACATCGCGCCCTGAAAGTCCGCGCCGCCCAGCACAATCGCAG
CGCCGAAGCGGAGATGCGCGCCATCCTCGAGGCCGCCGTGCGTCCCGAGGGCCGCTTGCTGCTGGGCACGGTTTTGCGGG
AGATCGGGCAGAAATACGACATCGCCAATGCTGACATCGAAGCCATTGCACAGGTCCGGGATACGCGTCCTGCCGAGCCC
ATGAAGTTTGAATGA
ATGGCCGCTGTCACCATTCGCAACCTCTCCGAGGAGGCACATCGCGCCCTGAAAGTCCGCGCCGCCCAGCACAATCGCAG
CGCCGAAGCGGAGATGCGCGCCATCCTCGAGGCCGCCGTGCGTCCCGAGGGCCGCTTGCTGCTGGGCACGGTTTTGCGGG
AGATCGGGCAGAAATACGACATCGCCAATGCTGACATCGAAGCCATTGCACAGGTCCGGGATACGCGTCCTGCCGAGCCC
ATGAAGTTTGAATGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0H3H713 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0H3HD25 |