Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | rlegTA/AbiEii-AbiEi |
| Location | 3412050..3413569 | Replicon | chromosome |
| Accession | NZ_CP064780 | ||
| Organism | Xanthomonas oryzae pv. oryzae strain DY89031(J18) | ||
Toxin (Protein)
| Gene name | rlegT | Uniprot ID | A0A0K0GMB6 |
| Locus tag | IV492_RS16025 | Protein ID | WP_011259680.1 |
| Coordinates | 3412050..3412973 (-) | Length | 308 a.a. |
Antitoxin (Protein)
| Gene name | rlegA | Uniprot ID | A0A854CLN1 |
| Locus tag | IV492_RS16030 | Protein ID | WP_011409027.1 |
| Coordinates | 3412970..3413569 (-) | Length | 200 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IV492_RS15985 | 3407293..3407514 | - | 222 | WP_154215184.1 | hypothetical protein | - |
| IV492_RS15990 | 3407649..3407801 | + | 153 | Protein_3054 | SAM-dependent methyltransferase | - |
| IV492_RS15995 | 3407913..3409289 | + | 1377 | Protein_3055 | IS5 family transposase | - |
| IV492_RS16000 | 3409309..3409841 | + | 533 | Protein_3056 | methyltransferase domain-containing protein | - |
| IV492_RS16005 | 3409858..3410367 | - | 510 | WP_011259678.1 | hypothetical protein | - |
| IV492_RS16010 | 3410792..3411034 | - | 243 | WP_011259679.1 | hypothetical protein | - |
| IV492_RS23900 | 3411500..3411970 | + | 471 | WP_228329666.1 | helix-turn-helix domain-containing protein | - |
| IV492_RS16025 | 3412050..3412973 | - | 924 | WP_011259680.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin |
| IV492_RS16030 | 3412970..3413569 | - | 600 | WP_011409027.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | Antitoxin |
| IV492_RS16035 | 3413934..3414224 | + | 291 | WP_233282844.1 | FaeA/PapI family transcriptional regulator | - |
| IV492_RS16040 | 3414256..3414744 | + | 489 | WP_027703988.1 | BrxE family protein | - |
| IV492_RS16045 | 3415258..3415259 | - | 2 | WP_113091170.1 | IS5 family transposase | - |
| IV492_RS16050 | 3415665..3416698 | - | 1034 | Protein_3065 | IS630 family transposase | - |
| IV492_RS23910 | 3417197..3417487 | + | 291 | WP_011409031.1 | hypothetical protein | - |
| IV492_RS23915 | 3417468..3417842 | + | 375 | WP_233282845.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 308 a.a. Molecular weight: 34114.16 Da Isoelectric Point: 5.4588
>T181715 WP_011259680.1 NZ_CP064780:c3412973-3412050 [Xanthomonas oryzae pv. oryzae]
MNEPDKSRRTVAASVRARLLNKARAERLDFNLLLTRYALERVLYRLSVSEQQGQFLLKGALLFDIWFDIPHRPTHDADLL
GFGSTEIPHLEDLFRRISQIASDDGIVFQADSVKAAEIRKEANYAGVRVTMIGLLDGARCTVQIDIGFGDAVTPGPDNVQ
YPVILDGMPQPQLRVYPRYTVVAEKLEAMVKLGILNSRMKDYFDLWVLAGHSDFDGAVLATAIRATFECRGTAIPPGAPL
GLTDEFGLDEQKTKQWQAFLRKNTLEPMPLTTVIEALREFVLPVLAALAAGEGFDRQWRAGAGWDAA
MNEPDKSRRTVAASVRARLLNKARAERLDFNLLLTRYALERVLYRLSVSEQQGQFLLKGALLFDIWFDIPHRPTHDADLL
GFGSTEIPHLEDLFRRISQIASDDGIVFQADSVKAAEIRKEANYAGVRVTMIGLLDGARCTVQIDIGFGDAVTPGPDNVQ
YPVILDGMPQPQLRVYPRYTVVAEKLEAMVKLGILNSRMKDYFDLWVLAGHSDFDGAVLATAIRATFECRGTAIPPGAPL
GLTDEFGLDEQKTKQWQAFLRKNTLEPMPLTTVIEALREFVLPVLAALAAGEGFDRQWRAGAGWDAA
Download Length: 924 bp
>T181715 NZ_CP086106:5737165-5737434 [Skermanella mucosa]
TTGACGAGACTCGCCTGGACCGACGCTGCTTGGGAAGATTATACTTGGTGGCAGGAGAACGATCGTAAGACGGCCCGCAG
GATCAACGAATTGATCAAGAGCGCCTTGCGGACGCCCTTCGACGGCGTTGGAAAGCCTGAGCCATTGAAAGGTGACTGGG
CGGGTTGGTGGTCCAGGCGGATAACCTTGGAGCACCGTCTGGTGTATCAAATCTCCAGGATCAACGGCGACGAGACATTG
ATCATCGCTCAATGCCGTTATCACTACTGA
TTGACGAGACTCGCCTGGACCGACGCTGCTTGGGAAGATTATACTTGGTGGCAGGAGAACGATCGTAAGACGGCCCGCAG
GATCAACGAATTGATCAAGAGCGCCTTGCGGACGCCCTTCGACGGCGTTGGAAAGCCTGAGCCATTGAAAGGTGACTGGG
CGGGTTGGTGGTCCAGGCGGATAACCTTGGAGCACCGTCTGGTGTATCAAATCTCCAGGATCAACGGCGACGAGACATTG
ATCATCGCTCAATGCCGTTATCACTACTGA
Antitoxin
Download Length: 200 a.a. Molecular weight: 22037.74 Da Isoelectric Point: 10.1240
>AT181715 WP_011409027.1 NZ_CP064780:c3413569-3412970 [Xanthomonas oryzae pv. oryzae]
MDTTVDKLLELVRTRGLLRPHDLAPLGIPRVALTRAVRRGQLERVGRGLYGLVARPVSAHGTLAEVARRVPKGVVCLLSA
LRVHDLTTQAPFEVWLAIDNKAAAPKLDYPPLRLVRFSGPALSEGVEEHVVDGVPVHVTSVAKTVADCFKYRNKIGIDVA
LEALREAWVARRMTSDEIWHYAKIDRVANVMRPYLESLA
MDTTVDKLLELVRTRGLLRPHDLAPLGIPRVALTRAVRRGQLERVGRGLYGLVARPVSAHGTLAEVARRVPKGVVCLLSA
LRVHDLTTQAPFEVWLAIDNKAAAPKLDYPPLRLVRFSGPALSEGVEEHVVDGVPVHVTSVAKTVADCFKYRNKIGIDVA
LEALREAWVARRMTSDEIWHYAKIDRVANVMRPYLESLA
Download Length: 600 bp
>AT181715 NZ_CP086106:5736866-5737168 [Skermanella mucosa]
ATGGGACATGTCAGCTATACTGAACTTCGGCAAAACCTGGCCCGGTACATGGATGAGGTATGCGACAGCAACGCGCCCCT
CGTCGTCACGCGGCAGAATGCGCGCCCTGTCGTGATGATCAGCCAGGATGAGTACGAAAGCATGGCGGCGACCCTCCACC
TGATCAAGTCGCCTCGCAACGCCCTTCGGCTCATCGAGTCCATGGAGGACGCCGAAGCTGGCCGGGTAAGCGAACGGGGA
TTGATAGAGGTGGACGACGAGGCGGAAACCGACCTTCGCACCGGCGACGGTGAGCCGGATTGA
ATGGGACATGTCAGCTATACTGAACTTCGGCAAAACCTGGCCCGGTACATGGATGAGGTATGCGACAGCAACGCGCCCCT
CGTCGTCACGCGGCAGAATGCGCGCCCTGTCGTGATGATCAGCCAGGATGAGTACGAAAGCATGGCGGCGACCCTCCACC
TGATCAAGTCGCCTCGCAACGCCCTTCGGCTCATCGAGTCCATGGAGGACGCCGAAGCTGGCCGGGTAAGCGAACGGGGA
TTGATAGAGGTGGACGACGAGGCGGAAACCGACCTTCGCACCGGCGACGGTGAGCCGGATTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A0K0GMB6 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A854CLN1 |