181713

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pmenTA/darT(toxin)
Location 1127422..1128140 Replicon chromosome
Accession NZ_CP064780
Organism Xanthomonas oryzae pv. oryzae strain DY89031(J18)

Toxin (Protein)


Gene name pmenT Uniprot ID -
Locus tag IV492_RS05430 Protein ID WP_199285672.1
Coordinates 1127811..1128140 (-) Length 110 a.a.

Antitoxin (Protein)


Gene name pmenA Uniprot ID -
Locus tag IV492_RS05425 Protein ID WP_233282864.1
Coordinates 1127422..1127814 (-) Length 131 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IV492_RS05405 1122747..1123427 - 681 WP_011257926.1 phosphate phosphatase -
IV492_RS05410 1123538..1124506 - 969 WP_011258188.1 IS5-like element ISXo1 family transposase -
IV492_RS05415 1124643..1125962 + 1320 WP_109181915.1 IS701-like element ISXo15 family transposase -
IV492_RS05420 1126183..1127397 - 1215 WP_011407913.1 IS4-like element ISXo14 family transposase -
IV492_RS05425 1127422..1127814 - 393 WP_233282864.1 macro domain-containing protein Antitoxin
IV492_RS05430 1127811..1128140 - 330 WP_199285672.1 DUF4433 domain-containing protein Toxin
IV492_RS05435 1128243..1129562 + 1320 WP_011407756.1 IS701 family transposase -
IV492_RS05440 1129606..1129941 - 336 WP_011407757.1 DarT ssDNA thymidine ADP-ribosyltransferase family protein -
IV492_RS05445 1130273..1131199 - 927 WP_011257932.1 Grx4 family monothiol glutaredoxin -
IV492_RS05450 1131245..1132036 + 792 WP_011407758.1 polysaccharide deacetylase family protein -
IV492_RS05460 1132338..1133009 - 672 WP_011407759.1 class I SAM-dependent methyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside IScluster/Tn - - 1121474..1129562 8088


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

ssDNA thymidine ADP-ribosyltransferase, DarT

(3-108)

Antitoxin

Macro domain

(18-97)


Sequences

Toxin        


Download         Length: 110 a.a.        Molecular weight: 13145.86 Da        Isoelectric Point: 7.1160

>T181713 WP_199285672.1 NZ_CP064780:c1128140-1127811 [Xanthomonas oryzae pv. oryzae]
MHHVAERRWPFLFTDSHAYCQLASFYSDLSDLDKIDWPLLQARDFRRDPDDPAKFERYQAEALIHRHLPLDGLRGIVCHT
DGLKQTIERQLQERNLKLPVHTRTDWYFR

Download         Length: 330 bp

>T181713 NZ_CP086106:c2750754-2750476 [Skermanella mucosa]
ATGATAAAGAGTTTTCGTGACAAGACCACCGAGGAGCTTTTCCGGCTCGGATCTGCCAGGAGATTTTCTTCAATTTCGAA
GGTGGCCTTGCGTAAACTCGACATGATCAATGCCGCGATCGCACTGGATGATCTTCGCAGCCCTCCCGGCAATAGGCTGG
AAGCGTTGAAGGGAGATCGCCACGGGCAGCACAGTATTCGCATCAACGAGCAATGGCGCATCTGCTTCCGATGGAGTGGC
GACGGTGCCGACGACGTGGAGATCGTCGATTATCACTGA

Antitoxin


Download         Length: 131 a.a.        Molecular weight: 14804.01 Da        Isoelectric Point: 7.9571

>AT181713 WP_233282864.1 NZ_CP064780:c1127814-1127422 [Xanthomonas oryzae pv. oryzae]
MITFTQGNLLESGAEALVNTVNTVGVMGKGIALMFKERFKENFLRYAAACKDNQVRIGKIFVTEVNELDGPRWIINFPTK
QHWRGDSRIEWITEGLQDLHLRFPHISSCEIKHLLHQGVEEGARMGHASR

Download         Length: 393 bp

>AT181713 NZ_CP086106:c2750453-2750166 [Skermanella mucosa]
ATGAGACTGAAGACCCACCCTGGAGAAGTGTTGCGCGAAGAGTTCCTGGCTCCCCTCGGGCTATCCGCGAATGCCCTTGC
CACGGCGTTGCGTGTGCCCGTTACGCGTATCAGCGAAATCATACACGAACGGCGCGCCGTCACGGCTGATACGGCTCTGC
GCCTGGGTCGCTACTTCGGCACCTCACCCGAGTTCTGGATGAACCTTCAGCAAGCCTACGATTTATCCGTCGTGGCCAGG
GACCGCGGCGGCGATATAGAACGTGACGTCCAGCCGCGGGCGGCGTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References