Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1995613..1995758 | Replicon | chromosome |
| Accession | NZ_CP064768 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain HS20R14 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1995649..1995751 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1995613..1995758 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HS20R14_RS09580 | 1990743..1992803 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HS20R14_RS09585 | 1992807..1993466 | - | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| HS20R14_RS09590 | 1993545..1993775 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HS20R14_RS09595 | 1993888..1994262 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HS20R14_RS09600 | 1994266..1995135 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| HS20R14_RS09605 | 1995152..1995490 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1995613..1995758 | - | 146 | - | - | Antitoxin |
| - | 1995649..1995751 | + | 103 | - | - | Toxin |
| HS20R14_RS09610 | 1996127..1996270 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HS20R14_RS09615 | 1996375..1997343 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HS20R14_RS09620 | 1997500..1998153 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| HS20R14_RS09625 | 1998150..1998341 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HS20R14_RS09630 | 1998439..1998678 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HS20R14_RS09635 | 1998794..2000227 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T181675 NZ_CP064768:1995649-1995751 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT181675 NZ_CP064768:c1995758-1995613 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
